Strain Fitness in Escherichia coli BL21 around ECD_01634

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01632 and ECD_01633 are separated by 39 nucleotidesECD_01633 and ECD_01634 are separated by 214 nucleotidesECD_01634 and ECD_01635 are separated by 40 nucleotides ECD_01632: ECD_01632 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent, at 1,686,682 to 1,687,830 _01632 ECD_01633: ECD_01633 - riboflavin synthase, alpha subunit, at 1,687,870 to 1,688,511 _01633 ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099 _01634 ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396 _01635 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1at 1688.535 kb on - strandat 1688.700 kb on + strandat 1688.876 kb on - strand, within ECD_01634at 1688.882 kb on - strand, within ECD_01634at 1688.882 kb on - strand, within ECD_01634at 1689.259 kb on + strand, within ECD_01634at 1689.259 kb on + strand, within ECD_01634at 1689.357 kb on - strand, within ECD_01634at 1689.866 kb on + strand, within ECD_01634at 1690.642 kb on - strand, within ECD_01635at 1690.779 kb on - strand, within ECD_01635at 1690.806 kb on - strand, within ECD_01635at 1690.933 kb on - strand, within ECD_01635

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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1,688,535 - +0.1
1,688,700 + -1.6
1,688,876 - ECD_01634 0.11 +1.3
1,688,882 - ECD_01634 0.11 +1.3
1,688,882 - ECD_01634 0.11 -1.6
1,689,259 + ECD_01634 0.39 -1.2
1,689,259 + ECD_01634 0.39 +0.7
1,689,357 - ECD_01634 0.46 +1.2
1,689,866 + ECD_01634 0.83 -0.4
1,690,642 - ECD_01635 0.40 -0.0
1,690,779 - ECD_01635 0.51 -1.9
1,690,806 - ECD_01635 0.53 +0.5
1,690,933 - ECD_01635 0.63 +0.2

Or see this region's nucleotide sequence