Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01202 and ECD_01203 overlap by 4 nucleotides ECD_01203 and ECD_01204 overlap by 4 nucleotides ECD_01204 and ECD_01205 overlap by 1 nucleotides
ECD_01202: ECD_01202 - nitrate reductase 1, alpha subunit, at 1,268,012 to 1,271,755
_01202
ECD_01203: ECD_01203 - nitrate reductase 1, beta (Fe-S) subunit, at 1,271,752 to 1,273,290
_01203
ECD_01204: ECD_01204 - molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1, at 1,273,287 to 1,273,997
_01204
ECD_01205: ECD_01205 - nitrate reductase 1, gamma (cytochrome b(NR)) subunit, at 1,273,997 to 1,274,674
_01205
Position (kb)
1271
1272
1273
1274 Strain fitness (log2 ratio)
-1
0
1
2 at 1270.808 kb on + strand, within ECD_01202 at 1271.123 kb on - strand, within ECD_01202 at 1271.147 kb on + strand, within ECD_01202 at 1271.315 kb on + strand, within ECD_01202 at 1271.682 kb on + strand at 1271.683 kb on - strand at 1271.748 kb on + strand at 1271.748 kb on + strand at 1271.829 kb on + strand at 1272.256 kb on + strand, within ECD_01203 at 1272.256 kb on + strand, within ECD_01203 at 1272.286 kb on + strand, within ECD_01203 at 1272.287 kb on - strand, within ECD_01203 at 1272.501 kb on + strand, within ECD_01203 at 1272.549 kb on + strand, within ECD_01203 at 1272.744 kb on + strand, within ECD_01203 at 1272.916 kb on + strand, within ECD_01203 at 1272.975 kb on + strand, within ECD_01203 at 1273.470 kb on + strand, within ECD_01204 at 1273.644 kb on + strand, within ECD_01204 at 1274.084 kb on + strand, within ECD_01205
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,270,808 + ECD_01202 0.75 +0.7 1,271,123 - ECD_01202 0.83 +0.2 1,271,147 + ECD_01202 0.84 +1.2 1,271,315 + ECD_01202 0.88 +1.5 1,271,682 + +0.7 1,271,683 - +0.6 1,271,748 + +2.2 1,271,748 + +0.4 1,271,829 + +0.6 1,272,256 + ECD_01203 0.33 -0.1 1,272,256 + ECD_01203 0.33 -0.8 1,272,286 + ECD_01203 0.35 +0.2 1,272,287 - ECD_01203 0.35 -0.5 1,272,501 + ECD_01203 0.49 -0.3 1,272,549 + ECD_01203 0.52 +0.8 1,272,744 + ECD_01203 0.64 +1.2 1,272,916 + ECD_01203 0.76 -0.6 1,272,975 + ECD_01203 0.79 -1.7 1,273,470 + ECD_01204 0.26 +0.8 1,273,644 + ECD_01204 0.50 -1.4 1,274,084 + ECD_01205 0.13 +1.4
Or see this region's nucleotide sequence