Strain Fitness in Escherichia coli BL21 around ECD_01201

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01200 and ECD_01201 are separated by 338 nucleotidesECD_01201 and ECD_01202 are separated by 515 nucleotides ECD_01200: ECD_01200 - sensory histidine kinase in two-component regulatory system with NarL, at 1,263,970 to 1,265,766 _01200 ECD_01201: ECD_01201 - nitrate/nitrite transporter, at 1,266,105 to 1,267,496 _01201 ECD_01202: ECD_01202 - nitrate reductase 1, alpha subunit, at 1,268,012 to 1,271,755 _01202 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -1 0 1 2 3at 1265.112 kb on + strand, within ECD_01200at 1265.113 kb on - strand, within ECD_01200at 1265.254 kb on - strand, within ECD_01200at 1265.695 kb on - strandat 1265.716 kb on - strandat 1266.443 kb on + strand, within ECD_01201at 1266.479 kb on + strand, within ECD_01201at 1266.520 kb on + strand, within ECD_01201at 1266.878 kb on + strand, within ECD_01201at 1267.471 kb on + strandat 1267.737 kb on - strandat 1267.954 kb on + strandat 1268.426 kb on - strand, within ECD_01202

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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1,265,112 + ECD_01200 0.64 +2.8
1,265,113 - ECD_01200 0.64 -1.3
1,265,254 - ECD_01200 0.71 +1.2
1,265,695 - +1.0
1,265,716 - -0.2
1,266,443 + ECD_01201 0.24 -0.9
1,266,479 + ECD_01201 0.27 -0.6
1,266,520 + ECD_01201 0.30 -0.6
1,266,878 + ECD_01201 0.56 -0.8
1,267,471 + +0.3
1,267,737 - -1.2
1,267,954 + +1.0
1,268,426 - ECD_01202 0.11 -0.3

Or see this region's nucleotide sequence