Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00900 and ECD_00901 are separated by 34 nucleotides ECD_00901 and ECD_00902 are separated by 313 nucleotides ECD_00902 and ECD_00903 are separated by 209 nucleotides
ECD_00900: ECD_00900 - dimethyl sulfoxide reductase, anaerobic, subunit C, at 949,124 to 949,987
_00900
ECD_00901: ECD_00901 - putative isochorismatase family hydrolase, at 950,022 to 950,648
_00901
ECD_00902: ECD_00902 - putative MFS transporter, inner membrane protein, at 950,962 to 952,110
_00902
ECD_00903: ECD_00903 - putative transporter, at 952,320 to 953,750
_00903
Position (kb) 950
951
952
953 Strain fitness (log2 ratio) -2
-1
0
1 at 949.985 kb on + strand at 950.111 kb on + strand, within ECD_00901 at 950.493 kb on + strand, within ECD_00901 at 950.675 kb on + strand at 950.675 kb on + strand at 950.676 kb on - strand at 950.718 kb on + strand at 950.730 kb on - strand at 951.109 kb on + strand, within ECD_00902 at 951.148 kb on + strand, within ECD_00902 at 951.148 kb on + strand, within ECD_00902 at 951.149 kb on - strand, within ECD_00902 at 951.181 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.365 kb on - strand, within ECD_00902 at 951.379 kb on + strand, within ECD_00902 at 951.379 kb on + strand, within ECD_00902 at 951.617 kb on + strand, within ECD_00902 at 951.618 kb on - strand, within ECD_00902 at 951.867 kb on - strand, within ECD_00902 at 952.712 kb on - strand, within ECD_00903 at 952.808 kb on + strand, within ECD_00903
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 949,985 + -0.2 950,111 + ECD_00901 0.14 -2.2 950,493 + ECD_00901 0.75 +0.6 950,675 + -0.9 950,675 + +1.2 950,676 - -0.8 950,718 + -0.2 950,730 - +1.6 951,109 + ECD_00902 0.13 -0.7 951,148 + ECD_00902 0.16 +0.0 951,148 + ECD_00902 0.16 +0.3 951,149 - ECD_00902 0.16 -0.7 951,181 + ECD_00902 0.19 -0.2 951,364 + ECD_00902 0.35 +1.2 951,364 + ECD_00902 0.35 -1.9 951,364 + ECD_00902 0.35 +1.3 951,365 - ECD_00902 0.35 -1.8 951,379 + ECD_00902 0.36 -0.8 951,379 + ECD_00902 0.36 -0.6 951,617 + ECD_00902 0.57 +0.1 951,618 - ECD_00902 0.57 +0.6 951,867 - ECD_00902 0.79 -1.8 952,712 - ECD_00903 0.27 +0.5 952,808 + ECD_00903 0.34 +1.1
Or see this region's nucleotide sequence