Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00604 and ECD_00605 are separated by 30 nucleotides ECD_00605 and ECD_00606 are separated by 3 nucleotides ECD_00606 and ECD_00607 are separated by 259 nucleotides ECD_00607 and ECD_00608 are separated by 23 nucleotides
ECD_00604: ECD_00604 - penicillin-binding protein 2, transpeptidase involved in peptidoglycan synthesis, at 626,679 to 628,580
_00604
ECD_00605: ECD_00605 - 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent, at 628,611 to 629,078
_00605
ECD_00606: ECD_00606 - ribosomal silencing factor, at 629,082 to 629,399
_00606
ECD_00607: ECD_00607 - putative alpha-ribazole-5'-P phosphatase, at 629,659 to 630,270
_00607
ECD_00608: ECD_00608 - nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent, at 630,294 to 630,935
_00608
Position (kb) 629
630 Strain fitness (log2 ratio) -1
0
1 at 628.704 kb on - strand, within ECD_00605 at 629.108 kb on - strand at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.256 kb on - strand, within ECD_00606 at 629.274 kb on - strand, within ECD_00606 at 629.445 kb on - strand at 629.445 kb on - strand at 629.816 kb on - strand, within ECD_00607 at 629.836 kb on + strand, within ECD_00607 at 629.865 kb on + strand, within ECD_00607 at 630.048 kb on + strand, within ECD_00607 at 630.119 kb on - strand, within ECD_00607 at 630.146 kb on - strand, within ECD_00607 at 630.153 kb on + strand, within ECD_00607 at 630.154 kb on - strand, within ECD_00607 at 630.215 kb on + strand at 630.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 628,704 - ECD_00605 0.20 -0.6 629,108 - +0.1 629,256 - ECD_00606 0.55 -0.5 629,256 - ECD_00606 0.55 +0.8 629,256 - ECD_00606 0.55 +0.6 629,256 - ECD_00606 0.55 +0.8 629,256 - ECD_00606 0.55 +0.5 629,256 - ECD_00606 0.55 +0.8 629,256 - ECD_00606 0.55 +0.7 629,274 - ECD_00606 0.60 -0.5 629,445 - -0.6 629,445 - -0.6 629,816 - ECD_00607 0.26 -1.0 629,836 + ECD_00607 0.29 -0.8 629,865 + ECD_00607 0.34 -0.3 630,048 + ECD_00607 0.64 +0.8 630,119 - ECD_00607 0.75 +0.0 630,146 - ECD_00607 0.80 -0.9 630,153 + ECD_00607 0.81 +0.2 630,154 - ECD_00607 0.81 -0.2 630,215 + -1.1 630,302 - +0.5
Or see this region's nucleotide sequence