Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00486 and ECD_00487 overlap by 145 nucleotides ECD_00487 and ECD_00488 are separated by 267 nucleotides ECD_00488 and ECD_00489 are separated by 98 nucleotides ECD_00489 and ECD_00490 overlap by 23 nucleotides ECD_00490 and ECD_00492 are separated by 86 nucleotides
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
ECD_00487: ECD_00487 - Excisionase, at 534,927 to 535,328
_00487
ECD_00488: ECD_00488 - hypothetical protein, at 535,596 to 535,814
_00488
ECD_00489: ECD_00489 - hypothetical protein, at 535,913 to 536,227
_00489
ECD_00490: ECD_00490 - putative DNA N-6-adenine-methyltransferase of bacteriophage, at 536,205 to 536,570
_00490
ECD_00492: ECD_00492 - hypothetical protein, at 536,657 to 536,842
_00492
Position (kb) 535
536 Strain fitness (log2 ratio) -1
0
1
2 at 534.613 kb on + strand, within ECD_00486 at 534.794 kb on - strand, within ECD_00486 at 535.040 kb on + strand at 535.040 kb on + strand at 535.041 kb on - strand at 535.115 kb on + strand, within ECD_00487 at 535.116 kb on - strand, within ECD_00487 at 535.193 kb on + strand, within ECD_00487 at 535.289 kb on - strand at 535.289 kb on - strand at 535.302 kb on + strand at 535.434 kb on + strand at 535.435 kb on - strand at 535.458 kb on - strand at 535.477 kb on - strand at 535.517 kb on + strand at 535.620 kb on - strand, within ECD_00488 at 535.845 kb on - strand at 535.845 kb on - strand at 536.274 kb on - strand, within ECD_00490 at 536.367 kb on - strand, within ECD_00490 at 536.455 kb on - strand, within ECD_00490 at 536.463 kb on + strand, within ECD_00490 at 536.464 kb on - strand, within ECD_00490 at 536.522 kb on + strand, within ECD_00490 at 536.530 kb on + strand, within ECD_00490 at 536.564 kb on - strand at 536.637 kb on + strand at 536.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 534,613 + ECD_00486 0.61 -0.2 534,794 - ECD_00486 0.76 +0.3 535,040 + +0.5 535,040 + -0.1 535,041 - +0.9 535,115 + ECD_00487 0.47 +1.6 535,116 - ECD_00487 0.47 -0.4 535,193 + ECD_00487 0.66 -0.7 535,289 - +0.2 535,289 - +0.4 535,302 + +0.3 535,434 + -0.5 535,435 - +2.0 535,458 - +0.8 535,477 - +0.3 535,517 + -1.0 535,620 - ECD_00488 0.11 +0.7 535,845 - +0.1 535,845 - +0.2 536,274 - ECD_00490 0.19 +2.5 536,367 - ECD_00490 0.44 +0.3 536,455 - ECD_00490 0.68 +0.8 536,463 + ECD_00490 0.70 +0.6 536,464 - ECD_00490 0.71 -0.0 536,522 + ECD_00490 0.87 +0.3 536,530 + ECD_00490 0.89 -0.3 536,564 - -0.1 536,637 + +0.5 536,638 - +0.2
Or see this region's nucleotide sequence