Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00382 and ECD_00383 are separated by 21 nucleotides ECD_00383 and ECD_00384 are separated by 461 nucleotides
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292
_00383
ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229
_00384
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 417.358 kb on - strand, within ECD_00382 at 417.384 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.552 kb on - strand, within ECD_00382 at 417.606 kb on + strand, within ECD_00382 at 417.614 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.730 kb on - strand, within ECD_00382 at 417.782 kb on + strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.880 kb on - strand, within ECD_00382 at 417.893 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 418.028 kb on + strand, within ECD_00382 at 418.140 kb on + strand at 418.140 kb on + strand at 418.140 kb on + strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.162 kb on - strand at 418.196 kb on + strand at 418.197 kb on - strand at 418.197 kb on - strand at 418.214 kb on + strand at 418.214 kb on + strand at 418.279 kb on - strand at 418.279 kb on - strand at 418.327 kb on + strand at 418.450 kb on - strand, within ECD_00383 at 418.499 kb on + strand, within ECD_00383 at 418.514 kb on + strand, within ECD_00383 at 418.515 kb on - strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.677 kb on + strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.004 kb on + strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.009 kb on - strand, within ECD_00383 at 419.060 kb on + strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.065 kb on - strand, within ECD_00383 at 419.204 kb on - strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.249 kb on - strand at 419.358 kb on - strand at 419.362 kb on + strand at 419.415 kb on - strand at 419.415 kb on - strand at 419.428 kb on + strand at 419.429 kb on - strand at 419.827 kb on - strand at 419.902 kb on - strand, within ECD_00384 at 420.005 kb on + strand, within ECD_00384 at 420.008 kb on - strand, within ECD_00384 at 420.072 kb on + strand, within ECD_00384 at 420.076 kb on + strand, within ECD_00384 at 420.076 kb on + strand, within ECD_00384 at 420.077 kb on - strand, within ECD_00384 at 420.131 kb on - strand, within ECD_00384 at 420.142 kb on - strand, within ECD_00384 at 420.191 kb on + strand, within ECD_00384 at 420.192 kb on - strand, within ECD_00384 at 420.195 kb on - strand, within ECD_00384 at 420.195 kb on - strand, within ECD_00384 at 420.281 kb on - strand, within ECD_00384
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 417,358 - ECD_00382 0.52 +0.2 417,384 + ECD_00382 0.53 +0.4 417,500 + ECD_00382 0.59 -0.6 417,500 + ECD_00382 0.59 +0.4 417,501 - ECD_00382 0.59 -0.2 417,501 - ECD_00382 0.59 +0.6 417,501 - ECD_00382 0.59 +0.5 417,501 - ECD_00382 0.59 -0.1 417,501 - ECD_00382 0.59 -0.5 417,501 - ECD_00382 0.59 +1.0 417,501 - ECD_00382 0.59 -0.0 417,501 - ECD_00382 0.59 -2.8 417,552 - ECD_00382 0.61 -0.9 417,606 + ECD_00382 0.64 +0.8 417,614 - ECD_00382 0.64 +0.3 417,728 - ECD_00382 0.70 +0.4 417,728 - ECD_00382 0.70 +0.7 417,730 - ECD_00382 0.70 +0.5 417,782 + ECD_00382 0.73 +0.1 417,783 - ECD_00382 0.73 +0.8 417,783 - ECD_00382 0.73 -0.2 417,783 - ECD_00382 0.73 +1.2 417,880 - ECD_00382 0.78 +0.4 417,893 - ECD_00382 0.78 +0.2 417,997 - ECD_00382 0.84 +0.3 417,997 - ECD_00382 0.84 +0.3 418,028 + ECD_00382 0.85 +0.6 418,140 + +1.3 418,140 + -0.3 418,140 + -1.5 418,141 - +0.1 418,141 - +0.2 418,141 - -0.3 418,141 - -0.2 418,141 - -1.9 418,141 - +0.8 418,142 + -0.0 418,142 + -0.2 418,142 + +3.1 418,143 - -0.5 418,143 - -0.0 418,143 - +0.1 418,143 - +0.8 418,143 - +1.1 418,143 - -0.4 418,143 - +0.2 418,143 - +0.2 418,143 - -0.4 418,143 - +0.1 418,162 - -0.7 418,196 + -0.7 418,197 - -0.7 418,197 - -0.4 418,214 + -0.4 418,214 + +0.3 418,279 - +0.4 418,279 - +2.7 418,327 + -2.6 418,450 - ECD_00383 0.11 +0.3 418,499 + ECD_00383 0.16 -0.1 418,514 + ECD_00383 0.18 -0.4 418,515 - ECD_00383 0.18 -1.0 418,626 + ECD_00383 0.30 +0.5 418,626 + ECD_00383 0.30 +0.3 418,627 - ECD_00383 0.30 +0.2 418,627 - ECD_00383 0.30 +0.6 418,677 + ECD_00383 0.35 -1.0 418,686 - ECD_00383 0.36 -0.1 418,686 - ECD_00383 0.36 -0.9 418,686 - ECD_00383 0.36 +0.2 418,686 - ECD_00383 0.36 +0.2 418,686 - ECD_00383 0.36 +0.7 419,000 - ECD_00383 0.69 +1.3 419,000 - ECD_00383 0.69 -0.5 419,004 + ECD_00383 0.70 +1.2 419,005 - ECD_00383 0.70 +0.4 419,005 - ECD_00383 0.70 -0.3 419,005 - ECD_00383 0.70 +0.0 419,009 - ECD_00383 0.70 +0.4 419,060 + ECD_00383 0.75 +0.4 419,061 - ECD_00383 0.76 -0.1 419,061 - ECD_00383 0.76 +0.4 419,064 + ECD_00383 0.76 +0.7 419,064 + ECD_00383 0.76 +0.3 419,064 + ECD_00383 0.76 -0.2 419,065 - ECD_00383 0.76 +1.3 419,204 - +0.2 419,234 - -0.5 419,234 - +0.7 419,249 - +0.6 419,358 - -0.6 419,362 + +0.1 419,415 - +0.6 419,415 - -0.2 419,428 + -0.9 419,429 - +0.4 419,827 - +0.1 419,902 - ECD_00384 0.10 -0.1 420,005 + ECD_00384 0.17 -1.3 420,008 - ECD_00384 0.17 +0.1 420,072 + ECD_00384 0.22 -0.4 420,076 + ECD_00384 0.22 +0.1 420,076 + ECD_00384 0.22 -0.6 420,077 - ECD_00384 0.22 +1.1 420,131 - ECD_00384 0.26 -0.4 420,142 - ECD_00384 0.26 -0.1 420,191 + ECD_00384 0.30 +0.1 420,192 - ECD_00384 0.30 -0.0 420,195 - ECD_00384 0.30 -0.1 420,195 - ECD_00384 0.30 -0.2 420,281 - ECD_00384 0.36 -2.2
Or see this region's nucleotide sequence