Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00230 and ECD_00231 overlap by 32 nucleotides ECD_00231 and ECD_00232 are separated by 56 nucleotides ECD_00232 and ECD_00233 are separated by 260 nucleotides ECD_00233 and ECD_00234 are separated by 91 nucleotides
ECD_00230: ECD_00230 - hypothetical protein, at 257,961 to 258,227
_00230
ECD_00231: ECD_00231 - peptide chain release factor 2, at 258,196 to 258,696
_00231
ECD_00232: ECD_00232 - aminoacyl-histidine dipeptidase (peptidase D), at 258,753 to 260,210
_00232
ECD_00233: ECD_00233 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase, at 260,471 to 260,929
_00233
ECD_00234: ECD_00234 - fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity, at 261,021 to 262,265
_00234
Position (kb) 258
259
260
261 Strain fitness (log2 ratio) -1
0
1
2
3 at 257.958 kb on + strand at 257.970 kb on + strand at 258.061 kb on + strand, within ECD_00230 at 258.062 kb on - strand, within ECD_00230 at 258.279 kb on - strand, within ECD_00231 at 258.301 kb on - strand, within ECD_00231 at 258.375 kb on + strand, within ECD_00231 at 258.456 kb on + strand, within ECD_00231 at 258.685 kb on - strand at 258.808 kb on - strand at 258.854 kb on + strand at 258.855 kb on - strand at 258.867 kb on - strand at 258.968 kb on - strand, within ECD_00232 at 258.979 kb on - strand, within ECD_00232 at 259.091 kb on - strand, within ECD_00232 at 259.097 kb on + strand, within ECD_00232 at 259.287 kb on - strand, within ECD_00232 at 259.297 kb on - strand, within ECD_00232 at 259.363 kb on + strand, within ECD_00232 at 259.364 kb on - strand, within ECD_00232 at 259.364 kb on - strand, within ECD_00232 at 259.367 kb on + strand, within ECD_00232 at 259.367 kb on + strand, within ECD_00232 at 259.368 kb on - strand, within ECD_00232 at 259.579 kb on - strand, within ECD_00232 at 259.587 kb on + strand, within ECD_00232 at 259.594 kb on - strand, within ECD_00232 at 259.681 kb on + strand, within ECD_00232 at 259.682 kb on - strand, within ECD_00232 at 259.853 kb on + strand, within ECD_00232 at 259.913 kb on + strand, within ECD_00232 at 259.913 kb on + strand, within ECD_00232 at 259.913 kb on + strand, within ECD_00232 at 259.914 kb on - strand, within ECD_00232 at 259.914 kb on - strand, within ECD_00232 at 259.914 kb on - strand, within ECD_00232 at 259.914 kb on - strand, within ECD_00232 at 259.915 kb on + strand, within ECD_00232 at 259.916 kb on - strand, within ECD_00232 at 259.916 kb on - strand, within ECD_00232 at 259.916 kb on - strand, within ECD_00232 at 260.037 kb on - strand, within ECD_00232 at 260.051 kb on + strand, within ECD_00232 at 260.052 kb on - strand, within ECD_00232 at 260.052 kb on - strand, within ECD_00232 at 260.056 kb on - strand, within ECD_00232 at 260.107 kb on + strand at 260.108 kb on - strand at 260.131 kb on + strand at 260.147 kb on + strand at 260.148 kb on - strand at 260.148 kb on - strand at 260.191 kb on - strand at 260.213 kb on + strand at 260.213 kb on + strand at 260.302 kb on - strand at 260.302 kb on - strand at 260.314 kb on - strand at 260.314 kb on - strand at 260.400 kb on - strand at 260.400 kb on - strand at 260.401 kb on + strand at 260.450 kb on - strand at 260.648 kb on - strand, within ECD_00233 at 260.657 kb on + strand, within ECD_00233 at 260.658 kb on - strand, within ECD_00233 at 260.683 kb on + strand, within ECD_00233 at 260.755 kb on + strand, within ECD_00233 at 260.843 kb on + strand, within ECD_00233 at 260.843 kb on + strand, within ECD_00233 at 260.969 kb on - strand at 260.983 kb on + strand at 260.989 kb on - strand at 260.989 kb on - strand at 261.003 kb on - strand at 261.003 kb on - strand at 261.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 257,958 + +1.1 257,970 + +0.3 258,061 + ECD_00230 0.37 -0.8 258,062 - ECD_00230 0.38 -1.0 258,279 - ECD_00231 0.17 +0.0 258,301 - ECD_00231 0.21 +0.2 258,375 + ECD_00231 0.36 +0.5 258,456 + ECD_00231 0.52 +0.6 258,685 - +0.3 258,808 - +0.3 258,854 + -0.0 258,855 - +1.4 258,867 - +0.5 258,968 - ECD_00232 0.15 -1.1 258,979 - ECD_00232 0.16 +0.6 259,091 - ECD_00232 0.23 -0.9 259,097 + ECD_00232 0.24 -0.1 259,287 - ECD_00232 0.37 +1.2 259,297 - ECD_00232 0.37 -1.4 259,363 + ECD_00232 0.42 +0.1 259,364 - ECD_00232 0.42 +1.3 259,364 - ECD_00232 0.42 +0.1 259,367 + ECD_00232 0.42 +1.3 259,367 + ECD_00232 0.42 -0.3 259,368 - ECD_00232 0.42 +0.8 259,579 - ECD_00232 0.57 +2.2 259,587 + ECD_00232 0.57 +0.6 259,594 - ECD_00232 0.58 +0.3 259,681 + ECD_00232 0.64 -1.2 259,682 - ECD_00232 0.64 -0.7 259,853 + ECD_00232 0.75 -0.4 259,913 + ECD_00232 0.80 +0.2 259,913 + ECD_00232 0.80 -0.7 259,913 + ECD_00232 0.80 -0.7 259,914 - ECD_00232 0.80 -0.6 259,914 - ECD_00232 0.80 -0.2 259,914 - ECD_00232 0.80 +0.7 259,914 - ECD_00232 0.80 +0.4 259,915 + ECD_00232 0.80 +0.2 259,916 - ECD_00232 0.80 -0.5 259,916 - ECD_00232 0.80 +0.1 259,916 - ECD_00232 0.80 -0.2 260,037 - ECD_00232 0.88 -0.1 260,051 + ECD_00232 0.89 +1.0 260,052 - ECD_00232 0.89 -0.2 260,052 - ECD_00232 0.89 -0.3 260,056 - ECD_00232 0.89 -0.9 260,107 + -0.6 260,108 - +0.4 260,131 + +0.2 260,147 + -0.2 260,148 - +0.2 260,148 - +0.6 260,191 - +0.2 260,213 + +0.4 260,213 + +0.7 260,302 - +1.7 260,302 - +0.2 260,314 - +0.4 260,314 - +0.2 260,400 - -0.1 260,400 - -0.3 260,401 + +0.2 260,450 - -0.8 260,648 - ECD_00233 0.39 -0.3 260,657 + ECD_00233 0.41 +0.7 260,658 - ECD_00233 0.41 +0.6 260,683 + ECD_00233 0.46 +0.4 260,755 + ECD_00233 0.62 -0.5 260,843 + ECD_00233 0.81 -1.0 260,843 + ECD_00233 0.81 -0.2 260,969 - -0.3 260,983 + +0.2 260,989 - -0.6 260,989 - +0.2 261,003 - +0.1 261,003 - -0.5 261,144 - +3.3
Or see this region's nucleotide sequence