Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21145

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21140 and CA264_21145 are separated by 52 nucleotidesCA264_21145 and CA264_21150 are separated by 43 nucleotides CA264_21140: CA264_21140 - 6-phosphogluconate dehydrogenase (decarboxylating), at 93,342 to 94,323 _21140 CA264_21145: CA264_21145 - glucoamylase, at 94,376 to 96,190 _21145 CA264_21150: CA264_21150 - alcohol dehydrogenase, at 96,234 to 97,343 _21150 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.424 kb on - strandat 93.431 kb on - strandat 93.546 kb on + strand, within CA264_21140at 93.546 kb on + strand, within CA264_21140at 93.547 kb on - strand, within CA264_21140at 93.547 kb on - strand, within CA264_21140at 93.640 kb on - strand, within CA264_21140at 93.640 kb on - strand, within CA264_21140at 93.697 kb on + strand, within CA264_21140at 93.698 kb on - strand, within CA264_21140at 93.775 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 93.965 kb on + strand, within CA264_21140at 94.028 kb on - strand, within CA264_21140at 94.064 kb on - strand, within CA264_21140at 94.184 kb on + strand, within CA264_21140at 94.249 kb on + strandat 94.250 kb on - strandat 94.321 kb on + strandat 94.322 kb on - strandat 94.355 kb on + strandat 94.355 kb on + strandat 94.355 kb on + strandat 94.356 kb on - strandat 94.367 kb on + strandat 94.367 kb on + strandat 94.391 kb on - strandat 94.453 kb on + strandat 94.453 kb on + strandat 94.680 kb on + strand, within CA264_21145at 94.748 kb on - strand, within CA264_21145at 94.752 kb on - strand, within CA264_21145at 95.033 kb on + strand, within CA264_21145at 95.034 kb on - strand, within CA264_21145at 95.102 kb on + strand, within CA264_21145at 95.103 kb on + strand, within CA264_21145at 95.103 kb on - strand, within CA264_21145at 95.103 kb on - strand, within CA264_21145at 95.111 kb on - strand, within CA264_21145at 95.111 kb on - strand, within CA264_21145at 95.171 kb on + strand, within CA264_21145at 95.286 kb on + strand, within CA264_21145at 95.286 kb on + strand, within CA264_21145at 95.286 kb on + strand, within CA264_21145at 95.287 kb on - strand, within CA264_21145at 95.316 kb on - strand, within CA264_21145at 95.411 kb on + strand, within CA264_21145at 95.445 kb on + strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.493 kb on - strand, within CA264_21145at 95.566 kb on - strand, within CA264_21145at 95.674 kb on + strand, within CA264_21145at 95.793 kb on + strand, within CA264_21145at 95.794 kb on - strand, within CA264_21145at 95.794 kb on - strand, within CA264_21145at 95.916 kb on + strand, within CA264_21145at 95.916 kb on + strand, within CA264_21145at 96.148 kb on + strandat 96.148 kb on + strandat 96.149 kb on - strandat 96.178 kb on + strandat 96.217 kb on + strandat 96.344 kb on + strandat 96.451 kb on + strand, within CA264_21150at 96.463 kb on + strand, within CA264_21150at 96.464 kb on - strand, within CA264_21150at 96.496 kb on + strand, within CA264_21150at 96.570 kb on + strand, within CA264_21150at 96.570 kb on + strand, within CA264_21150at 96.571 kb on - strand, within CA264_21150at 96.571 kb on - strand, within CA264_21150at 96.604 kb on - strand, within CA264_21150at 96.604 kb on - strand, within CA264_21150at 96.616 kb on - strand, within CA264_21150at 96.616 kb on - strand, within CA264_21150at 96.636 kb on + strand, within CA264_21150at 96.636 kb on + strand, within CA264_21150at 96.637 kb on - strand, within CA264_21150at 96.637 kb on - strand, within CA264_21150at 96.661 kb on + strand, within CA264_21150at 96.884 kb on + strand, within CA264_21150at 96.885 kb on - strand, within CA264_21150at 96.929 kb on - strand, within CA264_21150at 96.958 kb on + strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.986 kb on + strand, within CA264_21150at 96.987 kb on - strand, within CA264_21150at 97.007 kb on - strand, within CA264_21150at 97.007 kb on - strand, within CA264_21150at 97.055 kb on - strand, within CA264_21150at 97.056 kb on + strand, within CA264_21150at 97.056 kb on + strand, within CA264_21150at 97.057 kb on - strand, within CA264_21150at 97.057 kb on - strand, within CA264_21150at 97.100 kb on - strand, within CA264_21150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
93,424 - +0.4
93,431 - -0.0
93,546 + CA264_21140 0.21 -1.3
93,546 + CA264_21140 0.21 +0.7
93,547 - CA264_21140 0.21 +0.0
93,547 - CA264_21140 0.21 +0.3
93,640 - CA264_21140 0.30 +1.2
93,640 - CA264_21140 0.30 +0.9
93,697 + CA264_21140 0.36 +0.7
93,698 - CA264_21140 0.36 +0.6
93,775 + CA264_21140 0.44 -1.1
93,965 + CA264_21140 0.63 -0.7
93,965 + CA264_21140 0.63 -0.4
93,965 + CA264_21140 0.63 +0.9
94,028 - CA264_21140 0.70 +0.7
94,064 - CA264_21140 0.74 -0.8
94,184 + CA264_21140 0.86 -0.5
94,249 + -2.6
94,250 - +1.1
94,321 + +1.3
94,322 - +1.4
94,355 + -0.9
94,355 + -0.9
94,355 + -0.7
94,356 - -1.2
94,367 + +0.8
94,367 + +0.0
94,391 - -0.1
94,453 + -0.5
94,453 + -0.2
94,680 + CA264_21145 0.17 -0.7
94,748 - CA264_21145 0.20 -0.5
94,752 - CA264_21145 0.21 -0.3
95,033 + CA264_21145 0.36 +0.9
95,034 - CA264_21145 0.36 +1.6
95,102 + CA264_21145 0.40 +0.6
95,103 + CA264_21145 0.40 +0.4
95,103 - CA264_21145 0.40 -0.1
95,103 - CA264_21145 0.40 -1.9
95,111 - CA264_21145 0.40 -0.5
95,111 - CA264_21145 0.40 +0.0
95,171 + CA264_21145 0.44 -1.2
95,286 + CA264_21145 0.50 +0.4
95,286 + CA264_21145 0.50 +0.5
95,286 + CA264_21145 0.50 +0.6
95,287 - CA264_21145 0.50 -1.0
95,316 - CA264_21145 0.52 +0.2
95,411 + CA264_21145 0.57 -1.4
95,445 + CA264_21145 0.59 -0.0
95,471 - CA264_21145 0.60 -0.1
95,471 - CA264_21145 0.60 +0.1
95,471 - CA264_21145 0.60 -0.6
95,471 - CA264_21145 0.60 -1.3
95,493 - CA264_21145 0.62 -0.7
95,566 - CA264_21145 0.66 -0.3
95,674 + CA264_21145 0.72 -0.1
95,793 + CA264_21145 0.78 +0.0
95,794 - CA264_21145 0.78 +0.0
95,794 - CA264_21145 0.78 +0.1
95,916 + CA264_21145 0.85 -1.6
95,916 + CA264_21145 0.85 -0.5
96,148 + -0.5
96,148 + -0.5
96,149 - -0.4
96,178 + -1.4
96,217 + -0.0
96,344 + -1.2
96,451 + CA264_21150 0.20 -0.7
96,463 + CA264_21150 0.21 -0.5
96,464 - CA264_21150 0.21 +0.4
96,496 + CA264_21150 0.24 +0.2
96,570 + CA264_21150 0.30 -0.3
96,570 + CA264_21150 0.30 -0.5
96,571 - CA264_21150 0.30 +1.0
96,571 - CA264_21150 0.30 +0.1
96,604 - CA264_21150 0.33 -0.5
96,604 - CA264_21150 0.33 -0.7
96,616 - CA264_21150 0.34 +0.1
96,616 - CA264_21150 0.34 -0.3
96,636 + CA264_21150 0.36 -0.7
96,636 + CA264_21150 0.36 -0.6
96,637 - CA264_21150 0.36 +0.9
96,637 - CA264_21150 0.36 +0.3
96,661 + CA264_21150 0.38 +1.5
96,884 + CA264_21150 0.59 -0.3
96,885 - CA264_21150 0.59 +0.5
96,929 - CA264_21150 0.63 +2.3
96,958 + CA264_21150 0.65 -0.2
96,959 - CA264_21150 0.65 +0.7
96,959 - CA264_21150 0.65 +0.1
96,959 - CA264_21150 0.65 +0.4
96,959 - CA264_21150 0.65 +0.2
96,986 + CA264_21150 0.68 -1.5
96,987 - CA264_21150 0.68 +1.5
97,007 - CA264_21150 0.70 -0.4
97,007 - CA264_21150 0.70 +0.3
97,055 - CA264_21150 0.74 +2.8
97,056 + CA264_21150 0.74 -0.3
97,056 + CA264_21150 0.74 +0.6
97,057 - CA264_21150 0.74 +0.8
97,057 - CA264_21150 0.74 +0.5
97,100 - CA264_21150 0.78 +0.1

Or see this region's nucleotide sequence