Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20545

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20540 and CA264_20545 are separated by 79 nucleotidesCA264_20545 and CA264_20550 are separated by 129 nucleotidesCA264_20550 and CA264_20555 overlap by 8 nucleotides CA264_20540: CA264_20540 - transglycosylase, at 4,731,433 to 4,733,763 _20540 CA264_20545: CA264_20545 - epimerase, at 4,733,843 to 4,734,760 _20545 CA264_20550: CA264_20550 - GTP cyclohydrolase I FolE, at 4,734,890 to 4,735,558 _20550 CA264_20555: CA264_20555 - 6-pyruvoyl tetrahydrobiopterin synthase, at 4,735,551 to 4,735,958 _20555 Position (kb) 4733 4734 4735Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4732.858 kb on - strand, within CA264_20540at 4732.871 kb on - strand, within CA264_20540at 4732.908 kb on + strand, within CA264_20540at 4732.939 kb on + strand, within CA264_20540at 4732.939 kb on + strand, within CA264_20540at 4732.939 kb on + strand, within CA264_20540at 4732.940 kb on - strand, within CA264_20540at 4732.940 kb on - strand, within CA264_20540at 4732.993 kb on + strand, within CA264_20540at 4733.007 kb on + strand, within CA264_20540at 4733.073 kb on - strand, within CA264_20540at 4733.073 kb on - strand, within CA264_20540at 4733.073 kb on - strand, within CA264_20540at 4733.095 kb on + strand, within CA264_20540at 4733.103 kb on + strand, within CA264_20540at 4733.108 kb on + strand, within CA264_20540at 4733.108 kb on + strand, within CA264_20540at 4733.109 kb on - strand, within CA264_20540at 4733.191 kb on + strand, within CA264_20540at 4733.191 kb on + strand, within CA264_20540at 4733.192 kb on - strand, within CA264_20540at 4733.229 kb on + strand, within CA264_20540at 4733.230 kb on - strand, within CA264_20540at 4733.235 kb on + strand, within CA264_20540at 4733.461 kb on + strand, within CA264_20540at 4733.461 kb on + strand, within CA264_20540at 4733.462 kb on - strand, within CA264_20540at 4733.556 kb on + strandat 4733.556 kb on + strandat 4733.623 kb on - strandat 4733.623 kb on - strandat 4733.671 kb on - strandat 4733.826 kb on + strandat 4733.828 kb on + strandat 4733.833 kb on + strandat 4733.834 kb on - strandat 4733.839 kb on - strandat 4733.889 kb on + strandat 4733.896 kb on - strandat 4733.957 kb on - strand, within CA264_20545at 4734.053 kb on - strand, within CA264_20545at 4734.129 kb on - strand, within CA264_20545at 4734.171 kb on + strand, within CA264_20545at 4734.171 kb on + strand, within CA264_20545at 4734.172 kb on - strand, within CA264_20545at 4734.172 kb on - strand, within CA264_20545at 4734.287 kb on + strand, within CA264_20545at 4734.361 kb on - strand, within CA264_20545at 4734.437 kb on + strand, within CA264_20545at 4734.437 kb on + strand, within CA264_20545at 4734.438 kb on - strand, within CA264_20545at 4734.542 kb on + strand, within CA264_20545at 4734.542 kb on + strand, within CA264_20545at 4734.568 kb on + strand, within CA264_20545at 4734.568 kb on + strand, within CA264_20545at 4734.569 kb on - strand, within CA264_20545at 4734.570 kb on + strand, within CA264_20545at 4734.570 kb on + strand, within CA264_20545at 4734.571 kb on - strand, within CA264_20545at 4734.571 kb on - strand, within CA264_20545at 4734.599 kb on + strand, within CA264_20545at 4734.600 kb on - strand, within CA264_20545at 4734.600 kb on - strand, within CA264_20545at 4734.602 kb on - strand, within CA264_20545at 4734.634 kb on + strand, within CA264_20545at 4734.635 kb on - strand, within CA264_20545at 4734.720 kb on - strandat 4734.761 kb on - strandat 4734.761 kb on - strandat 4734.769 kb on - strandat 4734.790 kb on + strandat 4734.796 kb on - strandat 4734.813 kb on - strandat 4734.813 kb on - strandat 4734.830 kb on + strandat 4734.836 kb on - strandat 4734.878 kb on - strandat 4734.878 kb on - strandat 4735.182 kb on + strand, within CA264_20550at 4735.561 kb on + strandat 4735.562 kb on - strandat 4735.562 kb on - strandat 4735.588 kb on + strandat 4735.589 kb on - strandat 4735.595 kb on + strand, within CA264_20555at 4735.595 kb on + strand, within CA264_20555

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,732,858 - CA264_20540 0.61 +0.6
4,732,871 - CA264_20540 0.62 +1.0
4,732,908 + CA264_20540 0.63 +0.8
4,732,939 + CA264_20540 0.65 +0.5
4,732,939 + CA264_20540 0.65 +0.2
4,732,939 + CA264_20540 0.65 +0.8
4,732,940 - CA264_20540 0.65 -0.2
4,732,940 - CA264_20540 0.65 -0.3
4,732,993 + CA264_20540 0.67 +1.8
4,733,007 + CA264_20540 0.68 -0.5
4,733,073 - CA264_20540 0.70 +0.6
4,733,073 - CA264_20540 0.70 +1.3
4,733,073 - CA264_20540 0.70 +0.1
4,733,095 + CA264_20540 0.71 -0.3
4,733,103 + CA264_20540 0.72 +0.2
4,733,108 + CA264_20540 0.72 -0.7
4,733,108 + CA264_20540 0.72 +0.7
4,733,109 - CA264_20540 0.72 +0.7
4,733,191 + CA264_20540 0.75 +0.5
4,733,191 + CA264_20540 0.75 +0.4
4,733,192 - CA264_20540 0.75 +0.1
4,733,229 + CA264_20540 0.77 +0.4
4,733,230 - CA264_20540 0.77 +0.3
4,733,235 + CA264_20540 0.77 -0.2
4,733,461 + CA264_20540 0.87 -0.1
4,733,461 + CA264_20540 0.87 -1.6
4,733,462 - CA264_20540 0.87 +0.8
4,733,556 + +0.7
4,733,556 + -0.4
4,733,623 - +0.2
4,733,623 - -0.1
4,733,671 - -0.1
4,733,826 + -0.7
4,733,828 + +0.8
4,733,833 + +1.1
4,733,834 - -0.2
4,733,839 - -0.4
4,733,889 + +0.0
4,733,896 - -1.2
4,733,957 - CA264_20545 0.12 -1.0
4,734,053 - CA264_20545 0.23 -0.3
4,734,129 - CA264_20545 0.31 -0.5
4,734,171 + CA264_20545 0.36 +1.1
4,734,171 + CA264_20545 0.36 +0.4
4,734,172 - CA264_20545 0.36 -2.3
4,734,172 - CA264_20545 0.36 +1.6
4,734,287 + CA264_20545 0.48 +0.4
4,734,361 - CA264_20545 0.56 -1.4
4,734,437 + CA264_20545 0.65 +0.5
4,734,437 + CA264_20545 0.65 +1.2
4,734,438 - CA264_20545 0.65 -2.5
4,734,542 + CA264_20545 0.76 +0.9
4,734,542 + CA264_20545 0.76 +1.6
4,734,568 + CA264_20545 0.79 +1.6
4,734,568 + CA264_20545 0.79 +2.3
4,734,569 - CA264_20545 0.79 -0.2
4,734,570 + CA264_20545 0.79 +1.8
4,734,570 + CA264_20545 0.79 +1.6
4,734,571 - CA264_20545 0.79 +0.0
4,734,571 - CA264_20545 0.79 -0.4
4,734,599 + CA264_20545 0.82 +0.6
4,734,600 - CA264_20545 0.82 +0.0
4,734,600 - CA264_20545 0.82 -0.3
4,734,602 - CA264_20545 0.83 -0.9
4,734,634 + CA264_20545 0.86 +2.0
4,734,635 - CA264_20545 0.86 -0.1
4,734,720 - -1.1
4,734,761 - +0.1
4,734,761 - +0.5
4,734,769 - -1.4
4,734,790 + +1.9
4,734,796 - -0.0
4,734,813 - +0.6
4,734,813 - +1.5
4,734,830 + +1.5
4,734,836 - -0.1
4,734,878 - +0.5
4,734,878 - +1.2
4,735,182 + CA264_20550 0.44 +1.9
4,735,561 + -0.3
4,735,562 - +1.1
4,735,562 - +0.2
4,735,588 + +1.4
4,735,589 - +3.3
4,735,595 + CA264_20555 0.11 +1.0
4,735,595 + CA264_20555 0.11 +1.1

Or see this region's nucleotide sequence