Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20495

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20485 and CA264_20490 are separated by 43 nucleotidesCA264_20490 and CA264_20495 are separated by 206 nucleotidesCA264_20495 and CA264_20500 are separated by 134 nucleotides CA264_20485: CA264_20485 - hypothetical protein, at 4,720,095 to 4,720,523 _20485 CA264_20490: CA264_20490 - hypothetical protein, at 4,720,567 to 4,720,959 _20490 CA264_20495: CA264_20495 - DNA polymerase/3'-5' exonuclease PolX, at 4,721,166 to 4,722,869 _20495 CA264_20500: CA264_20500 - glycosyl transferase, at 4,723,004 to 4,724,002 _20500 Position (kb) 4721 4722 4723Strain fitness (log2 ratio) -2 -1 0 1 2at 4720.215 kb on - strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.218 kb on + strand, within CA264_20485at 4720.233 kb on + strand, within CA264_20485at 4720.234 kb on - strand, within CA264_20485at 4720.242 kb on + strand, within CA264_20485at 4720.243 kb on - strand, within CA264_20485at 4720.309 kb on - strand, within CA264_20485at 4720.309 kb on - strand, within CA264_20485at 4720.318 kb on + strand, within CA264_20485at 4720.368 kb on + strand, within CA264_20485at 4720.368 kb on + strand, within CA264_20485at 4720.369 kb on - strand, within CA264_20485at 4720.487 kb on + strandat 4720.514 kb on - strandat 4720.535 kb on - strandat 4720.536 kb on + strandat 4720.537 kb on - strandat 4720.565 kb on + strandat 4720.565 kb on + strandat 4720.565 kb on + strandat 4720.566 kb on - strandat 4720.568 kb on + strandat 4720.582 kb on + strandat 4720.619 kb on - strand, within CA264_20490at 4720.625 kb on + strand, within CA264_20490at 4720.917 kb on + strand, within CA264_20490at 4720.952 kb on + strandat 4720.977 kb on + strandat 4720.978 kb on - strandat 4720.989 kb on + strandat 4720.990 kb on - strandat 4720.997 kb on + strandat 4720.998 kb on - strandat 4720.998 kb on - strandat 4721.003 kb on + strandat 4721.004 kb on - strandat 4721.004 kb on - strandat 4721.005 kb on + strandat 4721.006 kb on - strandat 4721.006 kb on - strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.009 kb on + strandat 4721.010 kb on - strandat 4721.010 kb on - strandat 4721.015 kb on + strandat 4721.016 kb on - strandat 4721.025 kb on + strandat 4721.025 kb on + strandat 4721.061 kb on + strandat 4721.093 kb on - strandat 4721.134 kb on + strandat 4721.160 kb on + strandat 4721.161 kb on - strandat 4721.195 kb on + strandat 4721.417 kb on + strand, within CA264_20495at 4721.634 kb on + strand, within CA264_20495at 4721.675 kb on + strand, within CA264_20495at 4721.808 kb on - strand, within CA264_20495at 4721.972 kb on + strand, within CA264_20495at 4722.015 kb on + strand, within CA264_20495at 4722.016 kb on - strand, within CA264_20495at 4722.057 kb on + strand, within CA264_20495at 4722.057 kb on + strand, within CA264_20495at 4722.057 kb on + strand, within CA264_20495at 4722.058 kb on - strand, within CA264_20495at 4722.083 kb on + strand, within CA264_20495at 4722.114 kb on - strand, within CA264_20495at 4722.174 kb on + strand, within CA264_20495at 4722.192 kb on - strand, within CA264_20495at 4722.232 kb on - strand, within CA264_20495at 4722.233 kb on + strand, within CA264_20495at 4722.237 kb on + strand, within CA264_20495at 4722.238 kb on - strand, within CA264_20495at 4722.273 kb on + strand, within CA264_20495at 4722.363 kb on - strand, within CA264_20495at 4722.381 kb on - strand, within CA264_20495at 4722.405 kb on + strand, within CA264_20495at 4722.437 kb on + strand, within CA264_20495at 4722.438 kb on - strand, within CA264_20495at 4722.438 kb on - strand, within CA264_20495at 4722.520 kb on - strand, within CA264_20495at 4722.711 kb on - strandat 4722.756 kb on + strandat 4722.757 kb on - strandat 4722.829 kb on + strandat 4722.879 kb on + strandat 4722.879 kb on + strandat 4722.882 kb on - strandat 4722.972 kb on + strandat 4722.972 kb on + strandat 4722.974 kb on + strandat 4722.974 kb on + strandat 4722.975 kb on - strandat 4722.975 kb on - strandat 4722.975 kb on - strandat 4722.982 kb on + strandat 4722.998 kb on + strandat 4722.999 kb on - strandat 4723.001 kb on - strandat 4723.001 kb on - strandat 4723.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,720,215 - CA264_20485 0.28 +0.9
4,720,218 + CA264_20485 0.29 -0.7
4,720,218 + CA264_20485 0.29 -0.1
4,720,218 + CA264_20485 0.29 +0.2
4,720,233 + CA264_20485 0.32 +0.5
4,720,234 - CA264_20485 0.32 -2.3
4,720,242 + CA264_20485 0.34 +0.5
4,720,243 - CA264_20485 0.34 +0.2
4,720,309 - CA264_20485 0.50 +0.1
4,720,309 - CA264_20485 0.50 -0.9
4,720,318 + CA264_20485 0.52 -0.7
4,720,368 + CA264_20485 0.64 -0.1
4,720,368 + CA264_20485 0.64 +0.8
4,720,369 - CA264_20485 0.64 -0.5
4,720,487 + +0.3
4,720,514 - +0.6
4,720,535 - -0.4
4,720,536 + -0.5
4,720,537 - -1.2
4,720,565 + -0.8
4,720,565 + +1.5
4,720,565 + +0.1
4,720,566 - -1.8
4,720,568 + -0.7
4,720,582 + -0.7
4,720,619 - CA264_20490 0.13 -1.4
4,720,625 + CA264_20490 0.15 -1.4
4,720,917 + CA264_20490 0.89 -0.3
4,720,952 + -1.2
4,720,977 + -1.1
4,720,978 - -0.3
4,720,989 + +0.3
4,720,990 - -0.2
4,720,997 + +0.8
4,720,998 - -0.5
4,720,998 - -0.2
4,721,003 + +0.8
4,721,004 - +0.7
4,721,004 - +0.3
4,721,005 + -0.5
4,721,006 - -0.0
4,721,006 - -1.8
4,721,009 + -0.2
4,721,009 + +0.0
4,721,009 + +0.5
4,721,009 + -0.4
4,721,010 - +0.4
4,721,010 - +0.3
4,721,015 + -0.4
4,721,016 - -0.1
4,721,025 + +0.7
4,721,025 + +1.1
4,721,061 + -0.0
4,721,093 - +0.1
4,721,134 + -1.7
4,721,160 + -0.1
4,721,161 - -0.3
4,721,195 + +0.0
4,721,417 + CA264_20495 0.15 +0.0
4,721,634 + CA264_20495 0.27 +0.8
4,721,675 + CA264_20495 0.30 -0.0
4,721,808 - CA264_20495 0.38 +1.1
4,721,972 + CA264_20495 0.47 +1.3
4,722,015 + CA264_20495 0.50 -0.2
4,722,016 - CA264_20495 0.50 +1.4
4,722,057 + CA264_20495 0.52 +0.3
4,722,057 + CA264_20495 0.52 +1.3
4,722,057 + CA264_20495 0.52 -0.2
4,722,058 - CA264_20495 0.52 -0.3
4,722,083 + CA264_20495 0.54 +2.2
4,722,114 - CA264_20495 0.56 +0.6
4,722,174 + CA264_20495 0.59 -0.3
4,722,192 - CA264_20495 0.60 +0.6
4,722,232 - CA264_20495 0.63 -0.7
4,722,233 + CA264_20495 0.63 +0.5
4,722,237 + CA264_20495 0.63 +0.6
4,722,238 - CA264_20495 0.63 -0.5
4,722,273 + CA264_20495 0.65 +0.0
4,722,363 - CA264_20495 0.70 -0.6
4,722,381 - CA264_20495 0.71 +0.0
4,722,405 + CA264_20495 0.73 +1.3
4,722,437 + CA264_20495 0.75 +0.8
4,722,438 - CA264_20495 0.75 +0.5
4,722,438 - CA264_20495 0.75 +1.6
4,722,520 - CA264_20495 0.79 +0.3
4,722,711 - -0.3
4,722,756 + +0.2
4,722,757 - +1.4
4,722,829 + +0.1
4,722,879 + -0.2
4,722,879 + -0.3
4,722,882 - +0.4
4,722,972 + +0.0
4,722,972 + +0.0
4,722,974 + +0.7
4,722,974 + -0.1
4,722,975 - -0.2
4,722,975 - -0.1
4,722,975 - +0.2
4,722,982 + +0.6
4,722,998 + +1.5
4,722,999 - +0.4
4,723,001 - -1.0
4,723,001 - -0.3
4,723,001 - -0.6

Or see this region's nucleotide sequence