Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19600

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19595 and CA264_19600 are separated by 109 nucleotidesCA264_19600 and CA264_19605 are separated by 652 nucleotides CA264_19595: CA264_19595 - deoxyribonuclease HsdR, at 4,526,331 to 4,527,821 _19595 CA264_19600: CA264_19600 - aldehyde dehydrogenase family protein, at 4,527,931 to 4,529,508 _19600 CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718 _19605 Position (kb) 4527 4528 4529 4530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4526.937 kb on - strand, within CA264_19595at 4526.982 kb on - strand, within CA264_19595at 4527.201 kb on + strand, within CA264_19595at 4527.297 kb on + strand, within CA264_19595at 4527.297 kb on + strand, within CA264_19595at 4527.298 kb on - strand, within CA264_19595at 4527.298 kb on - strand, within CA264_19595at 4527.363 kb on - strand, within CA264_19595at 4527.487 kb on + strand, within CA264_19595at 4527.488 kb on - strand, within CA264_19595at 4527.657 kb on - strand, within CA264_19595at 4527.678 kb on - strandat 4527.678 kb on - strandat 4527.695 kb on + strandat 4527.699 kb on + strandat 4527.700 kb on - strandat 4527.700 kb on - strandat 4527.758 kb on - strandat 4527.762 kb on + strandat 4527.799 kb on - strandat 4527.891 kb on - strandat 4527.893 kb on - strandat 4527.893 kb on - strandat 4527.922 kb on + strandat 4527.922 kb on + strandat 4527.924 kb on + strandat 4528.007 kb on + strandat 4528.018 kb on + strandat 4528.065 kb on + strandat 4528.129 kb on + strand, within CA264_19600at 4528.140 kb on - strand, within CA264_19600at 4528.181 kb on + strand, within CA264_19600at 4528.367 kb on - strand, within CA264_19600at 4528.402 kb on + strand, within CA264_19600at 4528.403 kb on - strand, within CA264_19600at 4528.778 kb on + strand, within CA264_19600at 4528.778 kb on + strand, within CA264_19600at 4528.823 kb on + strand, within CA264_19600at 4528.824 kb on - strand, within CA264_19600at 4528.959 kb on + strand, within CA264_19600at 4528.965 kb on + strand, within CA264_19600at 4529.011 kb on - strand, within CA264_19600at 4529.011 kb on - strand, within CA264_19600at 4529.184 kb on + strand, within CA264_19600at 4529.184 kb on + strand, within CA264_19600at 4529.425 kb on + strandat 4529.510 kb on - strandat 4529.547 kb on + strandat 4529.547 kb on + strandat 4529.547 kb on + strandat 4529.548 kb on - strandat 4529.553 kb on + strandat 4529.554 kb on - strandat 4529.600 kb on - strandat 4529.609 kb on - strandat 4529.617 kb on - strandat 4529.668 kb on + strandat 4529.669 kb on - strandat 4529.699 kb on + strandat 4529.716 kb on - strandat 4529.716 kb on - strandat 4529.753 kb on + strandat 4529.753 kb on + strandat 4529.834 kb on + strandat 4530.002 kb on - strandat 4530.051 kb on + strandat 4530.082 kb on + strandat 4530.154 kb on + strandat 4530.186 kb on + strandat 4530.187 kb on - strandat 4530.245 kb on + strand, within CA264_19605at 4530.246 kb on - strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.265 kb on + strand, within CA264_19605at 4530.266 kb on - strand, within CA264_19605at 4530.299 kb on + strand, within CA264_19605at 4530.362 kb on + strand, within CA264_19605at 4530.363 kb on - strand, within CA264_19605at 4530.363 kb on - strand, within CA264_19605at 4530.419 kb on - strand, within CA264_19605

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,526,937 - CA264_19595 0.41 -0.0
4,526,982 - CA264_19595 0.44 -0.4
4,527,201 + CA264_19595 0.58 +0.3
4,527,297 + CA264_19595 0.65 -0.7
4,527,297 + CA264_19595 0.65 -0.8
4,527,298 - CA264_19595 0.65 +0.6
4,527,298 - CA264_19595 0.65 -1.2
4,527,363 - CA264_19595 0.69 +1.3
4,527,487 + CA264_19595 0.78 +0.3
4,527,488 - CA264_19595 0.78 +0.4
4,527,657 - CA264_19595 0.89 +0.2
4,527,678 - +0.5
4,527,678 - +0.2
4,527,695 + -2.1
4,527,699 + -0.6
4,527,700 - -0.0
4,527,700 - -0.5
4,527,758 - +0.5
4,527,762 + -0.1
4,527,799 - +0.5
4,527,891 - -1.5
4,527,893 - -0.3
4,527,893 - +0.2
4,527,922 + -0.8
4,527,922 + +0.4
4,527,924 + -0.2
4,528,007 + +0.0
4,528,018 + +0.2
4,528,065 + +0.8
4,528,129 + CA264_19600 0.13 -1.0
4,528,140 - CA264_19600 0.13 +0.5
4,528,181 + CA264_19600 0.16 -0.9
4,528,367 - CA264_19600 0.28 -0.1
4,528,402 + CA264_19600 0.30 -1.0
4,528,403 - CA264_19600 0.30 +0.5
4,528,778 + CA264_19600 0.54 -0.5
4,528,778 + CA264_19600 0.54 +0.9
4,528,823 + CA264_19600 0.57 -0.1
4,528,824 - CA264_19600 0.57 -0.2
4,528,959 + CA264_19600 0.65 -0.4
4,528,965 + CA264_19600 0.66 +0.8
4,529,011 - CA264_19600 0.68 -0.6
4,529,011 - CA264_19600 0.68 +0.1
4,529,184 + CA264_19600 0.79 -0.8
4,529,184 + CA264_19600 0.79 -1.7
4,529,425 + -1.4
4,529,510 - -1.4
4,529,547 + +0.2
4,529,547 + +0.3
4,529,547 + -1.2
4,529,548 - -0.2
4,529,553 + -0.8
4,529,554 - +0.5
4,529,600 - -1.3
4,529,609 - -1.2
4,529,617 - +0.7
4,529,668 + -2.7
4,529,669 - +0.1
4,529,699 + -0.2
4,529,716 - +1.9
4,529,716 - -0.7
4,529,753 + -1.0
4,529,753 + -1.0
4,529,834 + +0.5
4,530,002 - +0.6
4,530,051 + -0.2
4,530,082 + +0.9
4,530,154 + -0.6
4,530,186 + +0.1
4,530,187 - +0.0
4,530,245 + CA264_19605 0.15 -0.2
4,530,246 - CA264_19605 0.15 +1.0
4,530,254 + CA264_19605 0.17 -0.0
4,530,254 + CA264_19605 0.17 -0.0
4,530,254 + CA264_19605 0.17 -0.1
4,530,265 + CA264_19605 0.19 -2.8
4,530,266 - CA264_19605 0.19 +0.3
4,530,299 + CA264_19605 0.25 -0.3
4,530,362 + CA264_19605 0.36 -0.8
4,530,363 - CA264_19605 0.36 +0.4
4,530,363 - CA264_19605 0.36 +0.1
4,530,419 - CA264_19605 0.46 +0.0

Or see this region's nucleotide sequence