Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18850

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18845 and CA264_18850 are separated by 305 nucleotidesCA264_18850 and CA264_18855 are separated by 392 nucleotides CA264_18845: CA264_18845 - alpha/beta hydrolase, at 4,373,238 to 4,374,005 _18845 CA264_18850: CA264_18850 - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,374,311 to 4,376,227 _18850 CA264_18855: CA264_18855 - chromosome segregation protein ScpA, at 4,376,620 to 4,377,366 _18855 Position (kb) 4374 4375 4376 4377Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4373.430 kb on + strand, within CA264_18845at 4373.517 kb on + strand, within CA264_18845at 4373.517 kb on + strand, within CA264_18845at 4373.518 kb on - strand, within CA264_18845at 4373.584 kb on - strand, within CA264_18845at 4373.604 kb on - strand, within CA264_18845at 4373.626 kb on + strand, within CA264_18845at 4373.639 kb on + strand, within CA264_18845at 4373.682 kb on - strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.742 kb on + strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.743 kb on - strand, within CA264_18845at 4373.766 kb on + strand, within CA264_18845at 4373.767 kb on - strand, within CA264_18845at 4373.772 kb on + strand, within CA264_18845at 4373.773 kb on - strand, within CA264_18845at 4373.774 kb on + strand, within CA264_18845at 4373.774 kb on + strand, within CA264_18845at 4373.816 kb on - strand, within CA264_18845at 4373.840 kb on - strand, within CA264_18845at 4373.921 kb on + strand, within CA264_18845at 4373.973 kb on + strandat 4373.974 kb on - strandat 4374.016 kb on + strandat 4374.016 kb on + strandat 4374.017 kb on - strandat 4374.062 kb on + strandat 4374.095 kb on - strandat 4374.105 kb on - strandat 4374.192 kb on + strandat 4374.192 kb on + strandat 4374.200 kb on + strandat 4374.200 kb on + strandat 4374.201 kb on - strandat 4374.259 kb on + strandat 4374.260 kb on - strandat 4374.261 kb on + strandat 4374.265 kb on - strandat 4374.280 kb on + strandat 4374.284 kb on + strandat 4374.295 kb on - strandat 4374.295 kb on - strandat 4374.295 kb on - strandat 4374.298 kb on + strandat 4374.299 kb on - strandat 4374.299 kb on - strandat 4374.306 kb on - strandat 4374.309 kb on - strandat 4374.309 kb on - strandat 4374.309 kb on - strandat 4374.315 kb on - strandat 4376.240 kb on - strandat 4376.241 kb on + strandat 4376.242 kb on - strandat 4376.242 kb on - strandat 4376.273 kb on + strandat 4376.277 kb on + strandat 4376.315 kb on + strandat 4376.359 kb on - strandat 4376.364 kb on + strandat 4376.373 kb on + strandat 4376.374 kb on - strandat 4376.375 kb on + strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.385 kb on + strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.387 kb on + strandat 4376.392 kb on - strandat 4376.456 kb on - strandat 4376.460 kb on - strandat 4376.460 kb on - strandat 4376.484 kb on + strandat 4376.578 kb on + strandat 4376.580 kb on + strandat 4376.592 kb on + strandat 4376.770 kb on - strand, within CA264_18855at 4376.775 kb on + strand, within CA264_18855at 4376.899 kb on + strand, within CA264_18855at 4376.970 kb on - strand, within CA264_18855at 4377.046 kb on - strand, within CA264_18855at 4377.119 kb on - strand, within CA264_18855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
4,373,430 + CA264_18845 0.25 -0.8
4,373,517 + CA264_18845 0.36 -1.0
4,373,517 + CA264_18845 0.36 -1.4
4,373,518 - CA264_18845 0.36 -0.5
4,373,584 - CA264_18845 0.45 -0.5
4,373,604 - CA264_18845 0.48 -0.4
4,373,626 + CA264_18845 0.51 -1.4
4,373,639 + CA264_18845 0.52 -1.5
4,373,682 - CA264_18845 0.58 +0.7
4,373,742 + CA264_18845 0.66 +2.4
4,373,742 + CA264_18845 0.66 -1.2
4,373,742 + CA264_18845 0.66 -0.5
4,373,742 + CA264_18845 0.66 -1.3
4,373,742 + CA264_18845 0.66 -0.9
4,373,742 + CA264_18845 0.66 -0.4
4,373,742 + CA264_18845 0.66 -0.2
4,373,742 + CA264_18845 0.66 -2.1
4,373,743 - CA264_18845 0.66 -1.1
4,373,743 - CA264_18845 0.66 -0.5
4,373,743 - CA264_18845 0.66 -0.6
4,373,743 - CA264_18845 0.66 -1.4
4,373,743 - CA264_18845 0.66 -0.4
4,373,766 + CA264_18845 0.69 -0.5
4,373,767 - CA264_18845 0.69 -0.3
4,373,772 + CA264_18845 0.70 -2.8
4,373,773 - CA264_18845 0.70 -0.5
4,373,774 + CA264_18845 0.70 -1.1
4,373,774 + CA264_18845 0.70 -1.8
4,373,816 - CA264_18845 0.75 -0.9
4,373,840 - CA264_18845 0.78 -0.6
4,373,921 + CA264_18845 0.89 -0.6
4,373,973 + -2.4
4,373,974 - -1.5
4,374,016 + -0.1
4,374,016 + -1.1
4,374,017 - -2.1
4,374,062 + +1.4
4,374,095 - +0.3
4,374,105 - +0.0
4,374,192 + -0.1
4,374,192 + -3.0
4,374,200 + +1.7
4,374,200 + -2.1
4,374,201 - -0.2
4,374,259 + -1.1
4,374,260 - +0.0
4,374,261 + -2.5
4,374,265 - -2.2
4,374,280 + -0.1
4,374,284 + -2.0
4,374,295 - -1.2
4,374,295 - -1.0
4,374,295 - -0.4
4,374,298 + -0.8
4,374,299 - -0.7
4,374,299 - -1.2
4,374,306 - +0.2
4,374,309 - -0.9
4,374,309 - +0.4
4,374,309 - -1.1
4,374,315 - -1.1
4,376,240 - +1.0
4,376,241 + +2.2
4,376,242 - +2.0
4,376,242 - +0.7
4,376,273 + +1.0
4,376,277 + +2.7
4,376,315 + +1.4
4,376,359 - +2.0
4,376,364 + +2.1
4,376,373 + +1.7
4,376,374 - +1.6
4,376,375 + +0.8
4,376,382 - +2.6
4,376,382 - +2.2
4,376,382 - +0.6
4,376,382 - +2.4
4,376,385 + +0.9
4,376,386 - +1.5
4,376,386 - +2.2
4,376,386 - +2.1
4,376,386 - +2.4
4,376,387 + +1.2
4,376,392 - +2.4
4,376,456 - +1.2
4,376,460 - +1.4
4,376,460 - +2.0
4,376,484 + +1.3
4,376,578 + +1.9
4,376,580 + +3.0
4,376,592 + +1.3
4,376,770 - CA264_18855 0.20 +0.8
4,376,775 + CA264_18855 0.21 -0.2
4,376,899 + CA264_18855 0.37 +1.1
4,376,970 - CA264_18855 0.47 +2.2
4,377,046 - CA264_18855 0.57 +2.3
4,377,119 - CA264_18855 0.67 +1.2

Or see this region's nucleotide sequence