Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18385

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18375 and CA264_18380 are separated by 35 nucleotidesCA264_18380 and CA264_18385 are separated by 18 nucleotidesCA264_18385 and CA264_18390 are separated by 147 nucleotides CA264_18375: CA264_18375 - T9SS C-terminal target domain-containing protein, at 4,269,351 to 4,272,575 _18375 CA264_18380: CA264_18380 - hypothetical protein, at 4,272,611 to 4,273,543 _18380 CA264_18385: CA264_18385 - hypothetical protein, at 4,273,562 to 4,275,547 _18385 CA264_18390: CA264_18390 - oxidoreductase, at 4,275,695 to 4,276,888 _18390 Position (kb) 4273 4274 4275 4276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4272.566 kb on - strandat 4272.619 kb on - strandat 4272.620 kb on + strandat 4272.620 kb on + strandat 4272.621 kb on - strandat 4272.693 kb on + strandat 4272.694 kb on - strandat 4272.694 kb on - strandat 4272.694 kb on - strandat 4272.709 kb on + strand, within CA264_18380at 4272.797 kb on - strand, within CA264_18380at 4272.955 kb on - strand, within CA264_18380at 4272.955 kb on - strand, within CA264_18380at 4273.076 kb on + strand, within CA264_18380at 4273.077 kb on - strand, within CA264_18380at 4273.077 kb on - strand, within CA264_18380at 4273.174 kb on + strand, within CA264_18380at 4273.187 kb on - strand, within CA264_18380at 4273.222 kb on + strand, within CA264_18380at 4273.223 kb on - strand, within CA264_18380at 4273.454 kb on + strandat 4273.493 kb on + strandat 4273.535 kb on + strandat 4273.544 kb on + strandat 4273.556 kb on + strandat 4273.562 kb on - strandat 4273.562 kb on - strandat 4273.571 kb on - strandat 4273.571 kb on - strandat 4273.572 kb on + strandat 4273.573 kb on - strandat 4273.573 kb on - strandat 4273.575 kb on - strandat 4273.575 kb on - strandat 4273.575 kb on - strandat 4273.575 kb on - strandat 4273.577 kb on - strandat 4273.591 kb on + strandat 4273.593 kb on + strandat 4273.593 kb on + strandat 4273.605 kb on + strandat 4273.605 kb on + strandat 4273.657 kb on + strandat 4273.662 kb on + strandat 4273.763 kb on + strand, within CA264_18385at 4273.847 kb on + strand, within CA264_18385at 4273.850 kb on + strand, within CA264_18385at 4273.851 kb on - strand, within CA264_18385at 4273.851 kb on - strand, within CA264_18385at 4273.884 kb on - strand, within CA264_18385at 4273.884 kb on - strand, within CA264_18385at 4273.885 kb on + strand, within CA264_18385at 4273.886 kb on - strand, within CA264_18385at 4273.904 kb on + strand, within CA264_18385at 4273.904 kb on + strand, within CA264_18385at 4273.905 kb on - strand, within CA264_18385at 4274.173 kb on + strand, within CA264_18385at 4274.263 kb on + strand, within CA264_18385at 4274.448 kb on - strand, within CA264_18385at 4274.457 kb on + strand, within CA264_18385at 4274.511 kb on - strand, within CA264_18385at 4274.645 kb on + strand, within CA264_18385at 4274.646 kb on - strand, within CA264_18385at 4274.646 kb on - strand, within CA264_18385at 4274.662 kb on + strand, within CA264_18385at 4274.663 kb on - strand, within CA264_18385at 4274.670 kb on - strand, within CA264_18385at 4274.670 kb on - strand, within CA264_18385at 4274.869 kb on + strand, within CA264_18385at 4274.869 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.871 kb on + strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.872 kb on - strand, within CA264_18385at 4274.873 kb on + strand, within CA264_18385at 4274.874 kb on - strand, within CA264_18385at 4274.874 kb on - strand, within CA264_18385at 4274.914 kb on + strand, within CA264_18385at 4275.014 kb on - strand, within CA264_18385at 4275.026 kb on - strand, within CA264_18385at 4275.031 kb on + strand, within CA264_18385at 4275.031 kb on + strand, within CA264_18385at 4275.031 kb on + strand, within CA264_18385at 4275.032 kb on - strand, within CA264_18385at 4275.032 kb on - strand, within CA264_18385at 4275.047 kb on + strand, within CA264_18385at 4275.048 kb on - strand, within CA264_18385at 4275.070 kb on + strand, within CA264_18385at 4275.071 kb on - strand, within CA264_18385at 4275.071 kb on - strand, within CA264_18385at 4275.074 kb on + strand, within CA264_18385at 4275.075 kb on - strand, within CA264_18385at 4275.097 kb on - strand, within CA264_18385at 4275.166 kb on + strand, within CA264_18385at 4275.186 kb on + strand, within CA264_18385at 4275.218 kb on + strand, within CA264_18385at 4275.218 kb on + strand, within CA264_18385at 4275.315 kb on + strand, within CA264_18385at 4275.316 kb on - strand, within CA264_18385at 4275.391 kb on - strandat 4275.396 kb on - strandat 4275.406 kb on + strandat 4275.407 kb on - strandat 4275.407 kb on - strandat 4275.633 kb on - strandat 4275.656 kb on + strandat 4275.680 kb on + strandat 4275.680 kb on + strandat 4275.773 kb on - strandat 4275.791 kb on + strandat 4275.792 kb on - strandat 4275.892 kb on + strand, within CA264_18390at 4275.954 kb on + strand, within CA264_18390at 4276.051 kb on - strand, within CA264_18390at 4276.116 kb on + strand, within CA264_18390at 4276.117 kb on - strand, within CA264_18390at 4276.128 kb on + strand, within CA264_18390at 4276.129 kb on - strand, within CA264_18390at 4276.129 kb on - strand, within CA264_18390at 4276.143 kb on - strand, within CA264_18390at 4276.191 kb on - strand, within CA264_18390at 4276.209 kb on + strand, within CA264_18390at 4276.210 kb on - strand, within CA264_18390at 4276.368 kb on + strand, within CA264_18390at 4276.368 kb on + strand, within CA264_18390at 4276.368 kb on + strand, within CA264_18390at 4276.448 kb on + strand, within CA264_18390at 4276.449 kb on - strand, within CA264_18390at 4276.478 kb on - strand, within CA264_18390at 4276.478 kb on - strand, within CA264_18390at 4276.489 kb on - strand, within CA264_18390at 4276.489 kb on - strand, within CA264_18390at 4276.513 kb on - strand, within CA264_18390at 4276.547 kb on - strand, within CA264_18390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,272,566 - -0.6
4,272,619 - -0.7
4,272,620 + -0.0
4,272,620 + -0.7
4,272,621 - -0.5
4,272,693 + -0.7
4,272,694 - +0.2
4,272,694 - +0.4
4,272,694 - +0.3
4,272,709 + CA264_18380 0.11 -0.9
4,272,797 - CA264_18380 0.20 -0.2
4,272,955 - CA264_18380 0.37 +1.3
4,272,955 - CA264_18380 0.37 -0.5
4,273,076 + CA264_18380 0.50 -0.5
4,273,077 - CA264_18380 0.50 -0.2
4,273,077 - CA264_18380 0.50 +0.6
4,273,174 + CA264_18380 0.60 -1.0
4,273,187 - CA264_18380 0.62 -1.0
4,273,222 + CA264_18380 0.65 -0.7
4,273,223 - CA264_18380 0.66 -0.4
4,273,454 + -0.8
4,273,493 + +0.2
4,273,535 + -0.8
4,273,544 + +0.7
4,273,556 + -0.2
4,273,562 - +0.6
4,273,562 - -0.2
4,273,571 - -1.2
4,273,571 - -0.8
4,273,572 + +1.4
4,273,573 - +0.9
4,273,573 - -0.2
4,273,575 - -2.2
4,273,575 - -0.3
4,273,575 - -0.2
4,273,575 - +2.4
4,273,577 - -0.7
4,273,591 + +0.4
4,273,593 + -0.8
4,273,593 + +0.6
4,273,605 + -1.0
4,273,605 + -0.1
4,273,657 + -1.0
4,273,662 + -1.6
4,273,763 + CA264_18385 0.10 +0.1
4,273,847 + CA264_18385 0.14 +0.0
4,273,850 + CA264_18385 0.15 +1.9
4,273,851 - CA264_18385 0.15 +0.5
4,273,851 - CA264_18385 0.15 -0.3
4,273,884 - CA264_18385 0.16 -0.2
4,273,884 - CA264_18385 0.16 -0.3
4,273,885 + CA264_18385 0.16 +0.1
4,273,886 - CA264_18385 0.16 -1.2
4,273,904 + CA264_18385 0.17 +0.5
4,273,904 + CA264_18385 0.17 -1.0
4,273,905 - CA264_18385 0.17 +0.4
4,274,173 + CA264_18385 0.31 -1.3
4,274,263 + CA264_18385 0.35 +0.0
4,274,448 - CA264_18385 0.45 -0.1
4,274,457 + CA264_18385 0.45 +0.8
4,274,511 - CA264_18385 0.48 +0.1
4,274,645 + CA264_18385 0.55 -0.2
4,274,646 - CA264_18385 0.55 -0.2
4,274,646 - CA264_18385 0.55 +3.2
4,274,662 + CA264_18385 0.55 -1.9
4,274,663 - CA264_18385 0.55 -0.8
4,274,670 - CA264_18385 0.56 -0.5
4,274,670 - CA264_18385 0.56 +0.8
4,274,869 + CA264_18385 0.66 -1.2
4,274,869 + CA264_18385 0.66 -1.1
4,274,871 + CA264_18385 0.66 -0.0
4,274,871 + CA264_18385 0.66 +1.9
4,274,871 + CA264_18385 0.66 +0.3
4,274,871 + CA264_18385 0.66 -0.7
4,274,871 + CA264_18385 0.66 -0.5
4,274,871 + CA264_18385 0.66 -0.8
4,274,871 + CA264_18385 0.66 -0.8
4,274,871 + CA264_18385 0.66 +0.6
4,274,872 - CA264_18385 0.66 -1.0
4,274,872 - CA264_18385 0.66 +0.1
4,274,872 - CA264_18385 0.66 -0.4
4,274,872 - CA264_18385 0.66 +0.5
4,274,872 - CA264_18385 0.66 -0.7
4,274,872 - CA264_18385 0.66 -0.9
4,274,872 - CA264_18385 0.66 -0.1
4,274,872 - CA264_18385 0.66 -0.9
4,274,872 - CA264_18385 0.66 -0.2
4,274,872 - CA264_18385 0.66 +0.0
4,274,873 + CA264_18385 0.66 -1.4
4,274,874 - CA264_18385 0.66 -0.9
4,274,874 - CA264_18385 0.66 -0.1
4,274,914 + CA264_18385 0.68 -1.7
4,275,014 - CA264_18385 0.73 -0.1
4,275,026 - CA264_18385 0.74 +0.1
4,275,031 + CA264_18385 0.74 +0.1
4,275,031 + CA264_18385 0.74 -0.6
4,275,031 + CA264_18385 0.74 +0.4
4,275,032 - CA264_18385 0.74 -0.5
4,275,032 - CA264_18385 0.74 +0.3
4,275,047 + CA264_18385 0.75 -0.6
4,275,048 - CA264_18385 0.75 +0.5
4,275,070 + CA264_18385 0.76 -0.2
4,275,071 - CA264_18385 0.76 -1.4
4,275,071 - CA264_18385 0.76 -0.4
4,275,074 + CA264_18385 0.76 -2.2
4,275,075 - CA264_18385 0.76 +0.7
4,275,097 - CA264_18385 0.77 -0.0
4,275,166 + CA264_18385 0.81 +1.1
4,275,186 + CA264_18385 0.82 -2.4
4,275,218 + CA264_18385 0.83 -0.4
4,275,218 + CA264_18385 0.83 -3.3
4,275,315 + CA264_18385 0.88 -1.0
4,275,316 - CA264_18385 0.88 +0.1
4,275,391 - -0.1
4,275,396 - -0.4
4,275,406 + -0.1
4,275,407 - +0.7
4,275,407 - -0.8
4,275,633 - -1.2
4,275,656 + -2.0
4,275,680 + -1.9
4,275,680 + -0.2
4,275,773 - +1.2
4,275,791 + +0.1
4,275,792 - -0.1
4,275,892 + CA264_18390 0.16 -0.7
4,275,954 + CA264_18390 0.22 -0.3
4,276,051 - CA264_18390 0.30 -0.9
4,276,116 + CA264_18390 0.35 -0.5
4,276,117 - CA264_18390 0.35 +0.4
4,276,128 + CA264_18390 0.36 +0.0
4,276,129 - CA264_18390 0.36 -0.1
4,276,129 - CA264_18390 0.36 +0.8
4,276,143 - CA264_18390 0.38 -0.3
4,276,191 - CA264_18390 0.42 -0.8
4,276,209 + CA264_18390 0.43 +0.2
4,276,210 - CA264_18390 0.43 -0.7
4,276,368 + CA264_18390 0.56 -0.4
4,276,368 + CA264_18390 0.56 +0.1
4,276,368 + CA264_18390 0.56 -0.3
4,276,448 + CA264_18390 0.63 +0.6
4,276,449 - CA264_18390 0.63 -0.8
4,276,478 - CA264_18390 0.66 -0.8
4,276,478 - CA264_18390 0.66 +0.2
4,276,489 - CA264_18390 0.66 +0.4
4,276,489 - CA264_18390 0.66 -0.2
4,276,513 - CA264_18390 0.69 +0.1
4,276,547 - CA264_18390 0.71 -1.2

Or see this region's nucleotide sequence