Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18195

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18185 and CA264_18190 are separated by 95 nucleotidesCA264_18190 and CA264_18195 are separated by 16 nucleotidesCA264_18195 and CA264_18200 are separated by 187 nucleotides CA264_18185: CA264_18185 - homogentisate 1,2-dioxygenase, at 4,228,929 to 4,230,134 _18185 CA264_18190: CA264_18190 - hypothetical protein, at 4,230,230 to 4,230,757 _18190 CA264_18195: CA264_18195 - chaperonin, at 4,230,774 to 4,231,151 _18195 CA264_18200: CA264_18200 - T9SS C-terminal target domain-containing protein, at 4,231,339 to 4,235,103 _18200 Position (kb) 4230 4231 4232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4229.865 kb on + strand, within CA264_18185at 4229.866 kb on - strand, within CA264_18185at 4229.868 kb on + strand, within CA264_18185at 4229.885 kb on + strand, within CA264_18185at 4230.000 kb on + strand, within CA264_18185at 4230.001 kb on - strand, within CA264_18185at 4230.073 kb on - strandat 4230.123 kb on - strandat 4230.123 kb on - strandat 4230.152 kb on - strandat 4230.207 kb on + strandat 4230.208 kb on - strandat 4230.216 kb on + strandat 4230.218 kb on + strandat 4230.270 kb on + strandat 4230.361 kb on - strand, within CA264_18190at 4230.523 kb on + strand, within CA264_18190at 4230.524 kb on - strand, within CA264_18190at 4230.532 kb on + strand, within CA264_18190at 4230.533 kb on + strand, within CA264_18190at 4230.534 kb on - strand, within CA264_18190at 4230.595 kb on + strand, within CA264_18190at 4230.598 kb on + strand, within CA264_18190at 4230.641 kb on + strand, within CA264_18190at 4230.642 kb on - strand, within CA264_18190at 4230.659 kb on + strand, within CA264_18190at 4230.659 kb on + strand, within CA264_18190at 4230.660 kb on - strand, within CA264_18190at 4230.709 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.765 kb on - strandat 4230.765 kb on - strandat 4230.765 kb on - strandat 4230.769 kb on + strandat 4230.921 kb on + strand, within CA264_18195at 4230.922 kb on - strand, within CA264_18195at 4231.011 kb on + strand, within CA264_18195at 4231.012 kb on - strand, within CA264_18195at 4231.081 kb on - strand, within CA264_18195at 4231.096 kb on - strand, within CA264_18195at 4231.163 kb on - strandat 4231.312 kb on + strandat 4231.313 kb on - strandat 4231.401 kb on - strandat 4231.625 kb on + strandat 4231.626 kb on - strandat 4231.629 kb on + strandat 4231.629 kb on + strandat 4231.666 kb on - strandat 4231.682 kb on + strandat 4231.683 kb on - strandat 4231.836 kb on + strand, within CA264_18200at 4231.877 kb on - strand, within CA264_18200at 4231.896 kb on - strand, within CA264_18200at 4231.896 kb on - strand, within CA264_18200at 4231.899 kb on - strand, within CA264_18200at 4231.901 kb on + strand, within CA264_18200at 4231.901 kb on + strand, within CA264_18200at 4231.901 kb on + strand, within CA264_18200at 4231.901 kb on + strand, within CA264_18200at 4232.036 kb on + strand, within CA264_18200at 4232.036 kb on + strand, within CA264_18200at 4232.036 kb on + strand, within CA264_18200at 4232.037 kb on - strand, within CA264_18200at 4232.037 kb on - strand, within CA264_18200at 4232.037 kb on - strand, within CA264_18200at 4232.070 kb on - strand, within CA264_18200at 4232.122 kb on + strand, within CA264_18200at 4232.122 kb on + strand, within CA264_18200at 4232.122 kb on + strand, within CA264_18200at 4232.141 kb on - strand, within CA264_18200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,229,865 + CA264_18185 0.78 -1.1
4,229,866 - CA264_18185 0.78 +2.0
4,229,868 + CA264_18185 0.78 -1.3
4,229,885 + CA264_18185 0.79 +1.3
4,230,000 + CA264_18185 0.89 -1.3
4,230,001 - CA264_18185 0.89 -0.8
4,230,073 - +0.9
4,230,123 - +0.7
4,230,123 - -0.2
4,230,152 - -1.1
4,230,207 + +0.9
4,230,208 - +1.5
4,230,216 + -0.4
4,230,218 + -0.4
4,230,270 + -1.6
4,230,361 - CA264_18190 0.25 -0.1
4,230,523 + CA264_18190 0.55 -0.5
4,230,524 - CA264_18190 0.56 +0.1
4,230,532 + CA264_18190 0.57 -0.1
4,230,533 + CA264_18190 0.57 +0.3
4,230,534 - CA264_18190 0.58 -0.7
4,230,595 + CA264_18190 0.69 -0.4
4,230,598 + CA264_18190 0.70 -0.7
4,230,641 + CA264_18190 0.78 -0.7
4,230,642 - CA264_18190 0.78 +0.7
4,230,659 + CA264_18190 0.81 +0.2
4,230,659 + CA264_18190 0.81 -1.0
4,230,660 - CA264_18190 0.81 -0.6
4,230,709 + +0.2
4,230,764 + -2.2
4,230,764 + -0.2
4,230,764 + +0.2
4,230,764 + -0.3
4,230,764 + -0.5
4,230,765 - +0.0
4,230,765 - +0.2
4,230,765 - -0.5
4,230,769 + +1.5
4,230,921 + CA264_18195 0.39 +0.2
4,230,922 - CA264_18195 0.39 +2.1
4,231,011 + CA264_18195 0.63 -1.5
4,231,012 - CA264_18195 0.63 -0.2
4,231,081 - CA264_18195 0.81 +0.7
4,231,096 - CA264_18195 0.85 -1.1
4,231,163 - +0.1
4,231,312 + -3.0
4,231,313 - -0.5
4,231,401 - +0.3
4,231,625 + -1.0
4,231,626 - -0.1
4,231,629 + -1.8
4,231,629 + -1.1
4,231,666 - -0.2
4,231,682 + +0.5
4,231,683 - -1.1
4,231,836 + CA264_18200 0.13 -1.4
4,231,877 - CA264_18200 0.14 +0.1
4,231,896 - CA264_18200 0.15 -0.2
4,231,896 - CA264_18200 0.15 -0.3
4,231,899 - CA264_18200 0.15 -0.4
4,231,901 + CA264_18200 0.15 -1.8
4,231,901 + CA264_18200 0.15 +0.2
4,231,901 + CA264_18200 0.15 -0.3
4,231,901 + CA264_18200 0.15 -0.3
4,232,036 + CA264_18200 0.19 +1.7
4,232,036 + CA264_18200 0.19 -0.6
4,232,036 + CA264_18200 0.19 -0.2
4,232,037 - CA264_18200 0.19 -1.0
4,232,037 - CA264_18200 0.19 -0.9
4,232,037 - CA264_18200 0.19 -0.2
4,232,070 - CA264_18200 0.19 +0.8
4,232,122 + CA264_18200 0.21 -0.4
4,232,122 + CA264_18200 0.21 -1.0
4,232,122 + CA264_18200 0.21 -0.9
4,232,141 - CA264_18200 0.21 -1.2

Or see this region's nucleotide sequence