Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17480

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17475 and CA264_17480 are separated by 134 nucleotidesCA264_17480 and CA264_17485 are separated by 118 nucleotidesCA264_17485 and CA264_17490 are separated by 158 nucleotides CA264_17475: CA264_17475 - DNA replication and repair protein RecF, at 4,072,342 to 4,073,454 _17475 CA264_17480: CA264_17480 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 4,073,589 to 4,074,635 _17480 CA264_17485: CA264_17485 - cytochrome C biosynthesis protein, at 4,074,754 to 4,075,473 _17485 CA264_17490: CA264_17490 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,075,632 to 4,076,108 _17490 Position (kb) 4073 4074 4075Strain fitness (log2 ratio) -1 0 1 2 3 4at 4072.610 kb on + strand, within CA264_17475at 4072.778 kb on + strand, within CA264_17475at 4072.789 kb on + strand, within CA264_17475at 4072.820 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.989 kb on - strand, within CA264_17475at 4073.201 kb on - strand, within CA264_17475at 4073.321 kb on + strand, within CA264_17475at 4073.383 kb on - strandat 4073.414 kb on + strandat 4073.439 kb on + strandat 4073.464 kb on - strandat 4073.496 kb on + strandat 4073.514 kb on + strandat 4073.516 kb on + strandat 4073.552 kb on - strandat 4073.554 kb on - strandat 4073.582 kb on - strandat 4074.061 kb on + strand, within CA264_17480at 4074.694 kb on + strandat 4074.707 kb on + strandat 4074.707 kb on + strandat 4074.724 kb on + strandat 4074.743 kb on + strandat 4074.743 kb on + strandat 4074.749 kb on + strandat 4075.390 kb on + strand, within CA264_17485at 4075.427 kb on - strandat 4075.427 kb on - strandat 4075.429 kb on - strandat 4075.472 kb on - strandat 4075.493 kb on + strandat 4075.494 kb on - strandat 4075.494 kb on - strandat 4075.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,072,610 + CA264_17475 0.24 +1.0
4,072,778 + CA264_17475 0.39 -0.3
4,072,789 + CA264_17475 0.40 -0.8
4,072,820 + CA264_17475 0.43 -0.6
4,072,988 + CA264_17475 0.58 +0.3
4,072,988 + CA264_17475 0.58 -0.3
4,072,988 + CA264_17475 0.58 -0.1
4,072,989 - CA264_17475 0.58 -0.0
4,073,201 - CA264_17475 0.77 +0.5
4,073,321 + CA264_17475 0.88 -0.4
4,073,383 - -1.1
4,073,414 + -1.5
4,073,439 + -0.9
4,073,464 - +2.2
4,073,496 + +0.4
4,073,514 + -0.0
4,073,516 + -0.2
4,073,552 - +2.2
4,073,554 - +2.5
4,073,582 - +2.9
4,074,061 + CA264_17480 0.45 +1.6
4,074,694 + +0.7
4,074,707 + -0.1
4,074,707 + -0.2
4,074,724 + +0.2
4,074,743 + +0.9
4,074,743 + +1.0
4,074,749 + +1.4
4,075,390 + CA264_17485 0.88 -1.1
4,075,427 - +2.4
4,075,427 - +3.8
4,075,429 - +1.3
4,075,472 - +2.3
4,075,493 + -1.1
4,075,494 - +1.8
4,075,494 - +1.3
4,075,578 - +1.9

Or see this region's nucleotide sequence