Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17340

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17335 and CA264_17340 are separated by 246 nucleotidesCA264_17340 and CA264_17345 are separated by 46 nucleotides CA264_17335: CA264_17335 - HAD family hydrolase, at 4,040,820 to 4,041,425 _17335 CA264_17340: CA264_17340 - hypothetical protein, at 4,041,672 to 4,042,439 _17340 CA264_17345: CA264_17345 - ABC transporter ATP-binding protein, at 4,042,486 to 4,044,300 _17345 Position (kb) 4041 4042 4043Strain fitness (log2 ratio) -2 -1 0 1 2at 4040.741 kb on + strandat 4040.744 kb on - strandat 4041.109 kb on + strand, within CA264_17335at 4041.113 kb on + strand, within CA264_17335at 4041.114 kb on - strand, within CA264_17335at 4041.159 kb on - strand, within CA264_17335at 4041.200 kb on - strand, within CA264_17335at 4041.209 kb on + strand, within CA264_17335at 4041.210 kb on - strand, within CA264_17335at 4041.246 kb on + strand, within CA264_17335at 4041.246 kb on + strand, within CA264_17335at 4041.247 kb on - strand, within CA264_17335at 4041.326 kb on - strand, within CA264_17335at 4041.326 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335at 4041.328 kb on - strand, within CA264_17335at 4041.419 kb on + strandat 4041.419 kb on + strandat 4041.438 kb on + strandat 4041.439 kb on - strandat 4041.503 kb on + strandat 4041.504 kb on - strandat 4041.549 kb on - strandat 4041.572 kb on - strandat 4041.572 kb on - strandat 4041.611 kb on - strandat 4041.619 kb on - strandat 4041.619 kb on - strandat 4041.628 kb on + strandat 4041.628 kb on + strandat 4041.628 kb on + strandat 4041.629 kb on - strandat 4041.629 kb on - strandat 4041.629 kb on - strandat 4041.633 kb on - strandat 4041.671 kb on - strandat 4041.680 kb on - strandat 4041.816 kb on + strand, within CA264_17340at 4041.816 kb on + strand, within CA264_17340at 4041.817 kb on - strand, within CA264_17340at 4041.817 kb on - strand, within CA264_17340at 4041.820 kb on + strand, within CA264_17340at 4041.820 kb on + strand, within CA264_17340at 4041.821 kb on - strand, within CA264_17340at 4041.821 kb on - strand, within CA264_17340at 4041.834 kb on - strand, within CA264_17340at 4041.834 kb on - strand, within CA264_17340at 4041.834 kb on - strand, within CA264_17340at 4041.852 kb on + strand, within CA264_17340at 4041.853 kb on - strand, within CA264_17340at 4041.869 kb on + strand, within CA264_17340at 4041.872 kb on + strand, within CA264_17340at 4041.872 kb on + strand, within CA264_17340at 4041.873 kb on - strand, within CA264_17340at 4041.884 kb on - strand, within CA264_17340at 4041.942 kb on + strand, within CA264_17340at 4041.942 kb on + strand, within CA264_17340at 4041.945 kb on + strand, within CA264_17340at 4041.945 kb on + strand, within CA264_17340at 4041.945 kb on + strand, within CA264_17340at 4041.946 kb on - strand, within CA264_17340at 4041.946 kb on - strand, within CA264_17340at 4041.948 kb on - strand, within CA264_17340at 4041.970 kb on + strand, within CA264_17340at 4041.971 kb on - strand, within CA264_17340at 4041.980 kb on - strand, within CA264_17340at 4042.014 kb on + strand, within CA264_17340at 4042.015 kb on - strand, within CA264_17340at 4042.153 kb on - strand, within CA264_17340at 4042.153 kb on - strand, within CA264_17340at 4042.181 kb on + strand, within CA264_17340at 4042.202 kb on - strand, within CA264_17340at 4042.209 kb on + strand, within CA264_17340at 4042.209 kb on + strand, within CA264_17340at 4042.209 kb on + strand, within CA264_17340at 4042.209 kb on + strand, within CA264_17340at 4042.211 kb on + strand, within CA264_17340at 4042.211 kb on + strand, within CA264_17340at 4042.212 kb on - strand, within CA264_17340at 4042.215 kb on + strand, within CA264_17340at 4042.215 kb on + strand, within CA264_17340at 4042.216 kb on - strand, within CA264_17340at 4042.255 kb on + strand, within CA264_17340at 4042.256 kb on - strand, within CA264_17340at 4042.279 kb on + strand, within CA264_17340at 4042.279 kb on + strand, within CA264_17340at 4042.279 kb on + strand, within CA264_17340at 4042.279 kb on + strand, within CA264_17340at 4042.280 kb on - strand, within CA264_17340at 4042.281 kb on + strand, within CA264_17340at 4042.286 kb on + strand, within CA264_17340at 4042.286 kb on + strand, within CA264_17340at 4042.287 kb on - strand, within CA264_17340at 4042.350 kb on + strand, within CA264_17340at 4042.350 kb on + strand, within CA264_17340at 4042.354 kb on + strand, within CA264_17340at 4042.354 kb on + strand, within CA264_17340at 4042.354 kb on + strand, within CA264_17340at 4042.354 kb on + strand, within CA264_17340at 4042.355 kb on - strand, within CA264_17340at 4042.355 kb on - strand, within CA264_17340at 4042.365 kb on + strandat 4042.365 kb on + strandat 4042.366 kb on - strandat 4042.366 kb on - strandat 4042.390 kb on + strandat 4042.390 kb on + strandat 4042.390 kb on + strandat 4042.393 kb on - strandat 4042.393 kb on - strandat 4042.399 kb on - strandat 4042.406 kb on + strandat 4042.466 kb on - strandat 4042.502 kb on + strandat 4042.502 kb on + strandat 4042.503 kb on - strandat 4042.554 kb on + strandat 4042.584 kb on - strandat 4042.608 kb on - strandat 4042.650 kb on + strandat 4042.651 kb on - strandat 4042.728 kb on - strand, within CA264_17345at 4042.728 kb on - strand, within CA264_17345at 4042.874 kb on + strand, within CA264_17345at 4042.905 kb on - strand, within CA264_17345at 4043.118 kb on + strand, within CA264_17345at 4043.119 kb on - strand, within CA264_17345at 4043.191 kb on + strand, within CA264_17345at 4043.192 kb on - strand, within CA264_17345at 4043.236 kb on - strand, within CA264_17345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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4,040,741 + +0.5
4,040,744 - -1.8
4,041,109 + CA264_17335 0.48 +0.6
4,041,113 + CA264_17335 0.48 +1.7
4,041,114 - CA264_17335 0.49 -0.8
4,041,159 - CA264_17335 0.56 -1.4
4,041,200 - CA264_17335 0.63 -0.4
4,041,209 + CA264_17335 0.64 -1.0
4,041,210 - CA264_17335 0.64 -0.1
4,041,246 + CA264_17335 0.70 -0.0
4,041,246 + CA264_17335 0.70 -0.8
4,041,247 - CA264_17335 0.70 +0.9
4,041,326 - CA264_17335 0.83 -0.8
4,041,326 - CA264_17335 0.83 -0.1
4,041,328 - CA264_17335 0.84 -1.2
4,041,328 - CA264_17335 0.84 +0.5
4,041,328 - CA264_17335 0.84 -0.1
4,041,419 + +0.2
4,041,419 + +0.5
4,041,438 + -1.0
4,041,439 - +1.8
4,041,503 + -0.4
4,041,504 - -0.1
4,041,549 - -0.0
4,041,572 - -1.2
4,041,572 - -0.5
4,041,611 - -0.2
4,041,619 - -0.8
4,041,619 - -0.4
4,041,628 + -0.1
4,041,628 + +0.3
4,041,628 + -0.1
4,041,629 - -1.1
4,041,629 - -0.0
4,041,629 - -0.6
4,041,633 - -0.7
4,041,671 - -0.5
4,041,680 - +1.4
4,041,816 + CA264_17340 0.19 +0.3
4,041,816 + CA264_17340 0.19 -0.0
4,041,817 - CA264_17340 0.19 -2.1
4,041,817 - CA264_17340 0.19 -1.1
4,041,820 + CA264_17340 0.19 +0.0
4,041,820 + CA264_17340 0.19 +1.3
4,041,821 - CA264_17340 0.19 -0.7
4,041,821 - CA264_17340 0.19 -0.2
4,041,834 - CA264_17340 0.21 +2.0
4,041,834 - CA264_17340 0.21 +0.1
4,041,834 - CA264_17340 0.21 -0.3
4,041,852 + CA264_17340 0.23 +1.2
4,041,853 - CA264_17340 0.24 -0.1
4,041,869 + CA264_17340 0.26 -0.1
4,041,872 + CA264_17340 0.26 -0.0
4,041,872 + CA264_17340 0.26 -0.1
4,041,873 - CA264_17340 0.26 -1.0
4,041,884 - CA264_17340 0.28 +1.0
4,041,942 + CA264_17340 0.35 -0.2
4,041,942 + CA264_17340 0.35 +0.3
4,041,945 + CA264_17340 0.36 +0.5
4,041,945 + CA264_17340 0.36 -1.2
4,041,945 + CA264_17340 0.36 +1.2
4,041,946 - CA264_17340 0.36 -0.1
4,041,946 - CA264_17340 0.36 -0.4
4,041,948 - CA264_17340 0.36 -0.8
4,041,970 + CA264_17340 0.39 +0.7
4,041,971 - CA264_17340 0.39 +0.1
4,041,980 - CA264_17340 0.40 -0.4
4,042,014 + CA264_17340 0.45 +1.3
4,042,015 - CA264_17340 0.45 +0.1
4,042,153 - CA264_17340 0.63 -0.2
4,042,153 - CA264_17340 0.63 -1.0
4,042,181 + CA264_17340 0.66 +1.2
4,042,202 - CA264_17340 0.69 +0.3
4,042,209 + CA264_17340 0.70 -0.1
4,042,209 + CA264_17340 0.70 +0.7
4,042,209 + CA264_17340 0.70 -0.3
4,042,209 + CA264_17340 0.70 -0.6
4,042,211 + CA264_17340 0.70 +0.5
4,042,211 + CA264_17340 0.70 +0.2
4,042,212 - CA264_17340 0.70 -0.7
4,042,215 + CA264_17340 0.71 +0.4
4,042,215 + CA264_17340 0.71 +0.2
4,042,216 - CA264_17340 0.71 +0.4
4,042,255 + CA264_17340 0.76 -0.9
4,042,256 - CA264_17340 0.76 -0.4
4,042,279 + CA264_17340 0.79 -0.8
4,042,279 + CA264_17340 0.79 -0.2
4,042,279 + CA264_17340 0.79 -0.4
4,042,279 + CA264_17340 0.79 -0.3
4,042,280 - CA264_17340 0.79 -0.5
4,042,281 + CA264_17340 0.79 +0.6
4,042,286 + CA264_17340 0.80 +0.3
4,042,286 + CA264_17340 0.80 +0.8
4,042,287 - CA264_17340 0.80 +0.5
4,042,350 + CA264_17340 0.88 -0.2
4,042,350 + CA264_17340 0.88 -0.4
4,042,354 + CA264_17340 0.89 -0.4
4,042,354 + CA264_17340 0.89 -0.0
4,042,354 + CA264_17340 0.89 +0.8
4,042,354 + CA264_17340 0.89 -1.1
4,042,355 - CA264_17340 0.89 +0.8
4,042,355 - CA264_17340 0.89 -0.5
4,042,365 + +1.5
4,042,365 + -1.8
4,042,366 - +0.1
4,042,366 - -0.1
4,042,390 + +0.0
4,042,390 + +0.2
4,042,390 + -0.3
4,042,393 - +0.4
4,042,393 - -0.4
4,042,399 - -0.3
4,042,406 + -1.5
4,042,466 - +0.0
4,042,502 + +0.3
4,042,502 + +0.2
4,042,503 - +0.2
4,042,554 + -0.1
4,042,584 - -0.1
4,042,608 - +0.6
4,042,650 + -0.0
4,042,651 - -0.1
4,042,728 - CA264_17345 0.13 -1.8
4,042,728 - CA264_17345 0.13 +0.4
4,042,874 + CA264_17345 0.21 +0.5
4,042,905 - CA264_17345 0.23 -2.0
4,043,118 + CA264_17345 0.35 +0.7
4,043,119 - CA264_17345 0.35 +1.0
4,043,191 + CA264_17345 0.39 -0.2
4,043,192 - CA264_17345 0.39 +0.8
4,043,236 - CA264_17345 0.41 +0.9

Or see this region's nucleotide sequence