Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17035

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17030 and CA264_17035 are separated by 49 nucleotidesCA264_17035 and CA264_17040 overlap by 1 nucleotidesCA264_17040 and CA264_17045 are separated by 27 nucleotides CA264_17030: CA264_17030 - hypothetical protein, at 3,962,971 to 3,964,329 _17030 CA264_17035: CA264_17035 - ribose 5-phosphate isomerase B, at 3,964,379 to 3,964,816 _17035 CA264_17040: CA264_17040 - twin-arginine translocase subunit TatC, at 3,964,816 to 3,965,661 _17040 CA264_17045: CA264_17045 - serine hydroxymethyltransferase, at 3,965,689 to 3,966,963 _17045 Position (kb) 3964 3965Strain fitness (log2 ratio) -1 0 1 2at 3963.400 kb on + strand, within CA264_17030at 3963.433 kb on - strand, within CA264_17030at 3963.457 kb on + strand, within CA264_17030at 3963.458 kb on - strand, within CA264_17030at 3963.458 kb on - strand, within CA264_17030at 3963.479 kb on + strand, within CA264_17030at 3963.479 kb on + strand, within CA264_17030at 3963.480 kb on - strand, within CA264_17030at 3963.501 kb on + strand, within CA264_17030at 3963.502 kb on - strand, within CA264_17030at 3963.583 kb on + strand, within CA264_17030at 3963.583 kb on + strand, within CA264_17030at 3963.584 kb on - strand, within CA264_17030at 3963.584 kb on - strand, within CA264_17030at 3963.584 kb on - strand, within CA264_17030at 3963.587 kb on - strand, within CA264_17030at 3963.690 kb on + strand, within CA264_17030at 3963.691 kb on - strand, within CA264_17030at 3963.877 kb on + strand, within CA264_17030at 3963.990 kb on + strand, within CA264_17030at 3964.093 kb on + strand, within CA264_17030at 3964.093 kb on + strand, within CA264_17030at 3964.094 kb on - strand, within CA264_17030at 3964.096 kb on + strand, within CA264_17030at 3964.097 kb on - strand, within CA264_17030at 3964.097 kb on - strand, within CA264_17030at 3964.098 kb on + strand, within CA264_17030at 3964.098 kb on + strand, within CA264_17030at 3964.098 kb on + strand, within CA264_17030at 3964.098 kb on + strand, within CA264_17030at 3964.099 kb on - strand, within CA264_17030at 3964.123 kb on + strand, within CA264_17030at 3964.123 kb on + strand, within CA264_17030at 3964.127 kb on + strand, within CA264_17030at 3964.172 kb on - strand, within CA264_17030at 3964.226 kb on + strandat 3964.226 kb on + strandat 3964.227 kb on - strandat 3964.264 kb on - strandat 3964.264 kb on - strandat 3964.289 kb on - strandat 3964.289 kb on - strandat 3964.315 kb on + strandat 3964.316 kb on - strandat 3964.322 kb on + strandat 3964.373 kb on + strandat 3964.373 kb on + strandat 3964.375 kb on + strandat 3964.375 kb on + strandat 3965.708 kb on + strandat 3965.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,963,400 + CA264_17030 0.32 +0.5
3,963,433 - CA264_17030 0.34 +0.5
3,963,457 + CA264_17030 0.36 +0.5
3,963,458 - CA264_17030 0.36 +1.1
3,963,458 - CA264_17030 0.36 -1.2
3,963,479 + CA264_17030 0.37 +1.7
3,963,479 + CA264_17030 0.37 -0.9
3,963,480 - CA264_17030 0.37 +0.6
3,963,501 + CA264_17030 0.39 +0.8
3,963,502 - CA264_17030 0.39 +0.8
3,963,583 + CA264_17030 0.45 +0.5
3,963,583 + CA264_17030 0.45 -0.0
3,963,584 - CA264_17030 0.45 +1.1
3,963,584 - CA264_17030 0.45 -0.1
3,963,584 - CA264_17030 0.45 +1.1
3,963,587 - CA264_17030 0.45 +0.6
3,963,690 + CA264_17030 0.53 +1.1
3,963,691 - CA264_17030 0.53 -0.2
3,963,877 + CA264_17030 0.67 -0.5
3,963,990 + CA264_17030 0.75 +0.0
3,964,093 + CA264_17030 0.83 -0.1
3,964,093 + CA264_17030 0.83 +0.7
3,964,094 - CA264_17030 0.83 +0.7
3,964,096 + CA264_17030 0.83 +0.4
3,964,097 - CA264_17030 0.83 +0.5
3,964,097 - CA264_17030 0.83 -0.0
3,964,098 + CA264_17030 0.83 +2.4
3,964,098 + CA264_17030 0.83 -0.2
3,964,098 + CA264_17030 0.83 +0.5
3,964,098 + CA264_17030 0.83 -0.8
3,964,099 - CA264_17030 0.83 +0.3
3,964,123 + CA264_17030 0.85 +0.6
3,964,123 + CA264_17030 0.85 +0.0
3,964,127 + CA264_17030 0.85 +1.4
3,964,172 - CA264_17030 0.88 +1.0
3,964,226 + +0.7
3,964,226 + +0.5
3,964,227 - +1.4
3,964,264 - +0.2
3,964,264 - +1.9
3,964,289 - +1.0
3,964,289 - +1.6
3,964,315 + +1.0
3,964,316 - +1.3
3,964,322 + +0.5
3,964,373 + -0.2
3,964,373 + +1.6
3,964,375 + +0.8
3,964,375 + +0.4
3,965,708 + +1.1
3,965,728 + +1.2

Or see this region's nucleotide sequence