Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16715

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16705 and CA264_16710 overlap by 4 nucleotidesCA264_16710 and CA264_16715 are separated by 281 nucleotidesCA264_16715 and CA264_16720 are separated by 19 nucleotidesCA264_16720 and CA264_16725 are separated by 25 nucleotides CA264_16705: CA264_16705 - hypothetical protein, at 3,886,193 to 3,888,187 _16705 CA264_16710: CA264_16710 - transcriptional regulator, at 3,888,184 to 3,888,573 _16710 CA264_16715: CA264_16715 - flagellar motor protein MotB, at 3,888,855 to 3,890,840 _16715 CA264_16720: CA264_16720 - hypothetical protein, at 3,890,860 to 3,891,807 _16720 CA264_16725: CA264_16725 - hypothetical protein, at 3,891,833 to 3,896,788 _16725 Position (kb) 3888 3889 3890 3891Strain fitness (log2 ratio) -2 -1 0 1at 3887.856 kb on + strand, within CA264_16705at 3887.916 kb on - strand, within CA264_16705at 3887.921 kb on - strand, within CA264_16705at 3887.921 kb on - strand, within CA264_16705at 3887.980 kb on + strand, within CA264_16705at 3887.980 kb on - strand, within CA264_16705at 3887.989 kb on + strandat 3888.081 kb on - strandat 3888.099 kb on - strandat 3888.150 kb on - strandat 3888.208 kb on - strandat 3888.388 kb on - strand, within CA264_16710at 3888.426 kb on + strand, within CA264_16710at 3888.441 kb on + strand, within CA264_16710at 3888.517 kb on + strand, within CA264_16710at 3888.546 kb on + strandat 3888.565 kb on + strandat 3888.566 kb on - strandat 3888.581 kb on - strandat 3888.588 kb on + strandat 3888.589 kb on - strandat 3888.590 kb on + strandat 3888.590 kb on + strandat 3888.590 kb on + strandat 3888.591 kb on - strandat 3888.595 kb on + strandat 3888.596 kb on - strandat 3888.596 kb on - strandat 3888.599 kb on + strandat 3888.599 kb on + strandat 3888.608 kb on + strandat 3888.705 kb on + strandat 3888.786 kb on - strandat 3888.842 kb on + strandat 3888.842 kb on + strandat 3888.843 kb on - strandat 3888.969 kb on + strandat 3888.999 kb on - strandat 3889.003 kb on + strandat 3889.048 kb on + strandat 3889.083 kb on - strand, within CA264_16715at 3889.184 kb on - strand, within CA264_16715at 3889.184 kb on - strand, within CA264_16715at 3889.328 kb on - strand, within CA264_16715at 3889.355 kb on + strand, within CA264_16715at 3889.356 kb on - strand, within CA264_16715at 3889.447 kb on + strand, within CA264_16715at 3889.448 kb on - strand, within CA264_16715at 3889.478 kb on + strand, within CA264_16715at 3889.505 kb on + strand, within CA264_16715at 3889.505 kb on + strand, within CA264_16715at 3889.506 kb on - strand, within CA264_16715at 3889.610 kb on + strand, within CA264_16715at 3889.738 kb on + strand, within CA264_16715at 3889.739 kb on - strand, within CA264_16715at 3889.739 kb on - strand, within CA264_16715at 3889.739 kb on - strand, within CA264_16715at 3889.741 kb on - strand, within CA264_16715at 3889.852 kb on + strand, within CA264_16715at 3889.852 kb on + strand, within CA264_16715at 3889.852 kb on + strand, within CA264_16715at 3889.856 kb on + strand, within CA264_16715at 3889.898 kb on - strand, within CA264_16715at 3889.942 kb on + strand, within CA264_16715at 3889.943 kb on - strand, within CA264_16715at 3889.943 kb on - strand, within CA264_16715at 3890.020 kb on + strand, within CA264_16715at 3890.020 kb on + strand, within CA264_16715at 3890.021 kb on - strand, within CA264_16715at 3890.063 kb on + strand, within CA264_16715at 3890.063 kb on + strand, within CA264_16715at 3890.064 kb on - strand, within CA264_16715at 3890.110 kb on - strand, within CA264_16715at 3890.110 kb on - strand, within CA264_16715at 3890.259 kb on - strand, within CA264_16715at 3890.532 kb on - strand, within CA264_16715at 3890.532 kb on - strand, within CA264_16715at 3890.642 kb on - strandat 3890.704 kb on + strandat 3890.705 kb on - strandat 3890.705 kb on - strandat 3890.738 kb on + strandat 3890.743 kb on + strandat 3890.744 kb on - strandat 3890.832 kb on - strandat 3890.840 kb on + strandat 3890.842 kb on + strandat 3890.842 kb on + strandat 3890.842 kb on + strandat 3890.843 kb on - strandat 3890.846 kb on - strandat 3890.846 kb on - strandat 3890.846 kb on - strandat 3890.846 kb on - strandat 3890.863 kb on + strandat 3890.923 kb on + strandat 3890.961 kb on + strand, within CA264_16720at 3890.965 kb on - strand, within CA264_16720at 3890.975 kb on + strand, within CA264_16720at 3890.976 kb on + strand, within CA264_16720at 3891.064 kb on - strand, within CA264_16720at 3891.086 kb on + strand, within CA264_16720at 3891.312 kb on - strand, within CA264_16720at 3891.695 kb on + strand, within CA264_16720at 3891.696 kb on - strand, within CA264_16720at 3891.720 kb on + strandat 3891.839 kb on + strandat 3891.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,887,856 + CA264_16705 0.83 -0.1
3,887,916 - CA264_16705 0.86 -0.7
3,887,921 - CA264_16705 0.87 -0.7
3,887,921 - CA264_16705 0.87 -0.7
3,887,980 + CA264_16705 0.90 -0.2
3,887,980 - CA264_16705 0.90 +0.2
3,887,989 + +1.2
3,888,081 - -0.7
3,888,099 - -0.9
3,888,150 - -0.4
3,888,208 - +0.8
3,888,388 - CA264_16710 0.52 -0.3
3,888,426 + CA264_16710 0.62 +1.3
3,888,441 + CA264_16710 0.66 +0.6
3,888,517 + CA264_16710 0.85 +0.5
3,888,546 + +0.0
3,888,565 + -0.5
3,888,566 - +1.0
3,888,581 - +1.1
3,888,588 + +0.3
3,888,589 - +0.3
3,888,590 + -0.4
3,888,590 + -0.3
3,888,590 + -0.5
3,888,591 - -0.9
3,888,595 + -1.0
3,888,596 - +1.2
3,888,596 - +1.4
3,888,599 + -0.0
3,888,599 + -0.6
3,888,608 + -1.5
3,888,705 + -0.9
3,888,786 - -0.9
3,888,842 + -0.0
3,888,842 + +0.4
3,888,843 - +1.4
3,888,969 + +0.3
3,888,999 - +1.3
3,889,003 + -0.4
3,889,048 + +1.2
3,889,083 - CA264_16715 0.11 -1.1
3,889,184 - CA264_16715 0.17 -0.9
3,889,184 - CA264_16715 0.17 +0.1
3,889,328 - CA264_16715 0.24 +1.2
3,889,355 + CA264_16715 0.25 +1.5
3,889,356 - CA264_16715 0.25 -0.7
3,889,447 + CA264_16715 0.30 -0.9
3,889,448 - CA264_16715 0.30 -0.9
3,889,478 + CA264_16715 0.31 +0.1
3,889,505 + CA264_16715 0.33 +0.6
3,889,505 + CA264_16715 0.33 +0.1
3,889,506 - CA264_16715 0.33 -0.7
3,889,610 + CA264_16715 0.38 -0.3
3,889,738 + CA264_16715 0.44 +0.9
3,889,739 - CA264_16715 0.45 -1.3
3,889,739 - CA264_16715 0.45 -0.4
3,889,739 - CA264_16715 0.45 -0.8
3,889,741 - CA264_16715 0.45 -0.7
3,889,852 + CA264_16715 0.50 -0.1
3,889,852 + CA264_16715 0.50 +1.6
3,889,852 + CA264_16715 0.50 +0.3
3,889,856 + CA264_16715 0.50 -0.8
3,889,898 - CA264_16715 0.53 +0.6
3,889,942 + CA264_16715 0.55 -0.9
3,889,943 - CA264_16715 0.55 -0.6
3,889,943 - CA264_16715 0.55 +0.3
3,890,020 + CA264_16715 0.59 -0.7
3,890,020 + CA264_16715 0.59 +0.5
3,890,021 - CA264_16715 0.59 -0.4
3,890,063 + CA264_16715 0.61 -0.7
3,890,063 + CA264_16715 0.61 -1.1
3,890,064 - CA264_16715 0.61 -0.2
3,890,110 - CA264_16715 0.63 -2.0
3,890,110 - CA264_16715 0.63 +1.2
3,890,259 - CA264_16715 0.71 -0.1
3,890,532 - CA264_16715 0.84 +0.1
3,890,532 - CA264_16715 0.84 -0.5
3,890,642 - +0.8
3,890,704 + +0.6
3,890,705 - +1.2
3,890,705 - -0.0
3,890,738 + +0.2
3,890,743 + +1.3
3,890,744 - +0.6
3,890,832 - -1.1
3,890,840 + -1.2
3,890,842 + +0.6
3,890,842 + -0.1
3,890,842 + +0.4
3,890,843 - -0.3
3,890,846 - +0.3
3,890,846 - -0.7
3,890,846 - +0.2
3,890,846 - -0.5
3,890,863 + -2.2
3,890,923 + -0.2
3,890,961 + CA264_16720 0.11 +1.0
3,890,965 - CA264_16720 0.11 -1.6
3,890,975 + CA264_16720 0.12 +0.3
3,890,976 + CA264_16720 0.12 +0.1
3,891,064 - CA264_16720 0.22 -0.9
3,891,086 + CA264_16720 0.24 -0.1
3,891,312 - CA264_16720 0.48 -1.3
3,891,695 + CA264_16720 0.88 +1.7
3,891,696 - CA264_16720 0.88 +0.7
3,891,720 + +0.9
3,891,839 + -1.4
3,891,840 - -1.2

Or see this region's nucleotide sequence