Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15270

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15260 and CA264_15265 are separated by 108 nucleotidesCA264_15265 and CA264_15270 are separated by 119 nucleotidesCA264_15270 and CA264_15275 are separated by 180 nucleotidesCA264_15275 and CA264_15280 are separated by 0 nucleotides CA264_15260: CA264_15260 - glutamine amidotransferase, at 3,573,739 to 3,574,320 _15260 CA264_15265: CA264_15265 - colicin v production protein, at 3,574,429 to 3,574,947 _15265 CA264_15270: CA264_15270 - glutamyl-tRNA amidotransferase, at 3,575,067 to 3,575,528 _15270 CA264_15275: CA264_15275 - pyridoxine 5'-phosphate synthase, at 3,575,709 to 3,576,422 _15275 CA264_15280: CA264_15280 - tRNA 2-selenouridine synthase, at 3,576,423 to 3,577,451 _15280 Position (kb) 3575 3576Strain fitness (log2 ratio) -2 -1 0 1 2at 3574.269 kb on - strandat 3574.269 kb on - strandat 3574.283 kb on + strandat 3574.284 kb on - strandat 3574.287 kb on + strandat 3574.288 kb on - strandat 3574.331 kb on - strandat 3574.334 kb on + strandat 3574.394 kb on - strandat 3574.394 kb on - strandat 3574.481 kb on + strand, within CA264_15265at 3574.482 kb on - strand, within CA264_15265at 3574.482 kb on - strand, within CA264_15265at 3574.503 kb on - strand, within CA264_15265at 3574.503 kb on - strand, within CA264_15265at 3574.589 kb on + strand, within CA264_15265at 3574.589 kb on + strand, within CA264_15265at 3574.590 kb on - strand, within CA264_15265at 3574.633 kb on + strand, within CA264_15265at 3574.634 kb on - strand, within CA264_15265at 3574.634 kb on - strand, within CA264_15265at 3574.635 kb on + strand, within CA264_15265at 3574.636 kb on - strand, within CA264_15265at 3574.636 kb on - strand, within CA264_15265at 3574.755 kb on - strand, within CA264_15265at 3574.831 kb on + strand, within CA264_15265at 3574.832 kb on - strand, within CA264_15265at 3574.832 kb on - strand, within CA264_15265at 3574.896 kb on + strandat 3574.949 kb on + strandat 3574.952 kb on + strandat 3574.953 kb on - strandat 3574.953 kb on - strandat 3574.957 kb on + strandat 3574.957 kb on + strandat 3574.957 kb on + strandat 3574.960 kb on - strandat 3574.973 kb on + strandat 3574.973 kb on + strandat 3574.982 kb on - strandat 3575.016 kb on - strandat 3575.029 kb on + strandat 3575.030 kb on - strandat 3575.049 kb on - strandat 3575.061 kb on + strandat 3575.062 kb on - strandat 3575.063 kb on + strandat 3575.063 kb on + strandat 3575.081 kb on + strandat 3575.160 kb on + strand, within CA264_15270at 3575.160 kb on + strand, within CA264_15270at 3575.193 kb on + strand, within CA264_15270at 3575.258 kb on - strand, within CA264_15270at 3575.258 kb on - strand, within CA264_15270at 3575.265 kb on + strand, within CA264_15270at 3575.266 kb on - strand, within CA264_15270at 3575.266 kb on - strand, within CA264_15270at 3575.323 kb on + strand, within CA264_15270at 3575.361 kb on - strand, within CA264_15270at 3575.443 kb on - strand, within CA264_15270at 3575.445 kb on - strand, within CA264_15270at 3575.445 kb on - strand, within CA264_15270at 3575.461 kb on - strand, within CA264_15270at 3575.486 kb on + strandat 3575.487 kb on - strandat 3575.487 kb on - strandat 3575.496 kb on - strandat 3575.528 kb on + strandat 3575.529 kb on - strandat 3575.542 kb on + strandat 3575.543 kb on - strandat 3575.630 kb on + strandat 3575.650 kb on + strandat 3576.420 kb on + strandat 3576.420 kb on + strandat 3576.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,574,269 - -0.3
3,574,269 - -0.2
3,574,283 + -0.2
3,574,284 - +0.2
3,574,287 + -2.1
3,574,288 - -0.4
3,574,331 - -0.5
3,574,334 + -1.8
3,574,394 - +1.2
3,574,394 - +0.9
3,574,481 + CA264_15265 0.10 -0.0
3,574,482 - CA264_15265 0.10 -0.9
3,574,482 - CA264_15265 0.10 -1.4
3,574,503 - CA264_15265 0.14 -1.4
3,574,503 - CA264_15265 0.14 -0.1
3,574,589 + CA264_15265 0.31 -0.6
3,574,589 + CA264_15265 0.31 -0.9
3,574,590 - CA264_15265 0.31 -1.3
3,574,633 + CA264_15265 0.39 -0.8
3,574,634 - CA264_15265 0.39 -0.8
3,574,634 - CA264_15265 0.39 -2.1
3,574,635 + CA264_15265 0.40 -0.8
3,574,636 - CA264_15265 0.40 -0.6
3,574,636 - CA264_15265 0.40 +0.8
3,574,755 - CA264_15265 0.63 -1.4
3,574,831 + CA264_15265 0.77 -0.6
3,574,832 - CA264_15265 0.78 -0.5
3,574,832 - CA264_15265 0.78 -0.3
3,574,896 + -0.8
3,574,949 + +0.4
3,574,952 + -0.8
3,574,953 - -0.4
3,574,953 - +0.0
3,574,957 + +0.6
3,574,957 + -0.5
3,574,957 + -1.1
3,574,960 - -1.1
3,574,973 + -1.1
3,574,973 + -0.6
3,574,982 - -0.1
3,575,016 - -0.8
3,575,029 + -1.0
3,575,030 - -1.0
3,575,049 - -0.0
3,575,061 + -0.0
3,575,062 - +0.7
3,575,063 + -0.1
3,575,063 + -0.2
3,575,081 + -0.1
3,575,160 + CA264_15270 0.20 -1.3
3,575,160 + CA264_15270 0.20 +0.4
3,575,193 + CA264_15270 0.27 -1.4
3,575,258 - CA264_15270 0.41 -1.0
3,575,258 - CA264_15270 0.41 +0.0
3,575,265 + CA264_15270 0.43 -0.3
3,575,266 - CA264_15270 0.43 -0.5
3,575,266 - CA264_15270 0.43 -1.3
3,575,323 + CA264_15270 0.55 -1.2
3,575,361 - CA264_15270 0.64 -0.9
3,575,443 - CA264_15270 0.81 +2.0
3,575,445 - CA264_15270 0.82 +0.5
3,575,445 - CA264_15270 0.82 -0.2
3,575,461 - CA264_15270 0.85 -0.2
3,575,486 + -0.7
3,575,487 - -0.6
3,575,487 - +0.5
3,575,496 - -0.8
3,575,528 + -1.1
3,575,529 - -0.6
3,575,542 + +0.5
3,575,543 - -0.8
3,575,630 + +2.4
3,575,650 + -0.5
3,576,420 + +0.4
3,576,420 + -0.8
3,576,442 + +0.2

Or see this region's nucleotide sequence