Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15200

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15190 and CA264_15195 overlap by 11 nucleotidesCA264_15195 and CA264_15200 are separated by 45 nucleotidesCA264_15200 and CA264_15205 are separated by 104 nucleotides CA264_15190: CA264_15190 - hypothetical protein, at 3,559,316 to 3,559,573 _15190 CA264_15195: CA264_15195 - phosphate ABC transporter substrate-binding protein, PhoT family, at 3,559,563 to 3,560,504 _15195 CA264_15200: CA264_15200 - hypothetical protein, at 3,560,550 to 3,562,193 _15200 CA264_15205: CA264_15205 - RNA pseudouridine synthase, at 3,562,298 to 3,563,332 _15205 Position (kb) 3560 3561 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3559.562 kb on + strandat 3559.563 kb on - strandat 3559.613 kb on - strandat 3559.735 kb on - strand, within CA264_15195at 3559.916 kb on + strand, within CA264_15195at 3560.102 kb on + strand, within CA264_15195at 3560.102 kb on + strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.129 kb on + strand, within CA264_15195at 3560.154 kb on + strand, within CA264_15195at 3560.155 kb on - strand, within CA264_15195at 3560.320 kb on - strand, within CA264_15195at 3560.358 kb on + strand, within CA264_15195at 3560.359 kb on - strand, within CA264_15195at 3560.409 kb on + strand, within CA264_15195at 3560.410 kb on - strandat 3560.508 kb on + strandat 3560.515 kb on + strandat 3560.568 kb on + strandat 3560.676 kb on - strandat 3560.679 kb on + strandat 3560.679 kb on + strandat 3560.680 kb on - strandat 3560.680 kb on - strandat 3560.682 kb on - strandat 3560.697 kb on - strandat 3560.739 kb on - strand, within CA264_15200at 3560.926 kb on + strand, within CA264_15200at 3560.949 kb on + strand, within CA264_15200at 3561.050 kb on - strand, within CA264_15200at 3561.135 kb on + strand, within CA264_15200at 3561.147 kb on + strand, within CA264_15200at 3561.169 kb on - strand, within CA264_15200at 3561.270 kb on + strand, within CA264_15200at 3561.271 kb on - strand, within CA264_15200at 3561.274 kb on - strand, within CA264_15200at 3561.323 kb on - strand, within CA264_15200at 3561.565 kb on - strand, within CA264_15200at 3561.699 kb on - strand, within CA264_15200at 3561.717 kb on - strand, within CA264_15200at 3561.735 kb on - strand, within CA264_15200at 3561.769 kb on - strand, within CA264_15200at 3561.769 kb on - strand, within CA264_15200at 3561.771 kb on + strand, within CA264_15200at 3561.774 kb on + strand, within CA264_15200at 3561.782 kb on + strand, within CA264_15200at 3561.789 kb on + strand, within CA264_15200at 3561.789 kb on + strand, within CA264_15200at 3561.790 kb on - strand, within CA264_15200at 3561.791 kb on + strand, within CA264_15200at 3561.792 kb on - strand, within CA264_15200at 3561.871 kb on - strand, within CA264_15200at 3561.901 kb on - strand, within CA264_15200at 3561.907 kb on - strand, within CA264_15200at 3561.979 kb on - strand, within CA264_15200at 3561.982 kb on - strand, within CA264_15200at 3562.063 kb on - strandat 3562.066 kb on - strandat 3562.066 kb on - strandat 3562.072 kb on - strandat 3562.209 kb on - strandat 3562.209 kb on - strandat 3562.213 kb on + strandat 3562.316 kb on + strandat 3562.470 kb on + strand, within CA264_15205at 3562.512 kb on + strand, within CA264_15205at 3562.513 kb on - strand, within CA264_15205at 3562.612 kb on - strand, within CA264_15205at 3562.612 kb on - strand, within CA264_15205at 3562.677 kb on - strand, within CA264_15205at 3562.723 kb on + strand, within CA264_15205at 3562.767 kb on + strand, within CA264_15205at 3562.770 kb on + strand, within CA264_15205at 3562.770 kb on + strand, within CA264_15205at 3562.950 kb on - strand, within CA264_15205at 3562.969 kb on + strand, within CA264_15205at 3562.971 kb on + strand, within CA264_15205at 3562.972 kb on - strand, within CA264_15205at 3563.121 kb on - strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.187 kb on - strand, within CA264_15205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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3,559,562 + +0.8
3,559,563 - -0.0
3,559,613 - -1.3
3,559,735 - CA264_15195 0.18 +0.5
3,559,916 + CA264_15195 0.37 +1.0
3,560,102 + CA264_15195 0.57 -0.4
3,560,102 + CA264_15195 0.57 -1.1
3,560,103 - CA264_15195 0.57 -0.5
3,560,103 - CA264_15195 0.57 -2.0
3,560,103 - CA264_15195 0.57 +0.2
3,560,103 - CA264_15195 0.57 -0.0
3,560,129 + CA264_15195 0.60 -1.9
3,560,154 + CA264_15195 0.63 +0.4
3,560,155 - CA264_15195 0.63 +1.3
3,560,320 - CA264_15195 0.80 -0.8
3,560,358 + CA264_15195 0.84 -0.2
3,560,359 - CA264_15195 0.85 -0.3
3,560,409 + CA264_15195 0.90 -1.9
3,560,410 - -1.2
3,560,508 + +1.0
3,560,515 + +1.0
3,560,568 + -0.7
3,560,676 - -3.5
3,560,679 + +0.3
3,560,679 + -2.4
3,560,680 - -1.4
3,560,680 - -2.2
3,560,682 - -1.6
3,560,697 - -0.3
3,560,739 - CA264_15200 0.11 -1.0
3,560,926 + CA264_15200 0.23 -1.2
3,560,949 + CA264_15200 0.24 -0.8
3,561,050 - CA264_15200 0.30 -2.2
3,561,135 + CA264_15200 0.36 -2.2
3,561,147 + CA264_15200 0.36 -0.2
3,561,169 - CA264_15200 0.38 -0.4
3,561,270 + CA264_15200 0.44 -1.7
3,561,271 - CA264_15200 0.44 -1.7
3,561,274 - CA264_15200 0.44 -1.1
3,561,323 - CA264_15200 0.47 -1.7
3,561,565 - CA264_15200 0.62 -1.5
3,561,699 - CA264_15200 0.70 -0.0
3,561,717 - CA264_15200 0.71 -1.6
3,561,735 - CA264_15200 0.72 -0.6
3,561,769 - CA264_15200 0.74 -1.7
3,561,769 - CA264_15200 0.74 -1.1
3,561,771 + CA264_15200 0.74 -1.3
3,561,774 + CA264_15200 0.74 -1.5
3,561,782 + CA264_15200 0.75 -0.7
3,561,789 + CA264_15200 0.75 -2.1
3,561,789 + CA264_15200 0.75 -1.4
3,561,790 - CA264_15200 0.75 -1.6
3,561,791 + CA264_15200 0.75 -0.9
3,561,792 - CA264_15200 0.76 -0.2
3,561,871 - CA264_15200 0.80 -3.3
3,561,901 - CA264_15200 0.82 -1.3
3,561,907 - CA264_15200 0.83 -1.6
3,561,979 - CA264_15200 0.87 -0.5
3,561,982 - CA264_15200 0.87 -1.4
3,562,063 - +0.2
3,562,066 - -0.6
3,562,066 - -1.6
3,562,072 - -3.3
3,562,209 - -0.5
3,562,209 - -0.4
3,562,213 + -0.4
3,562,316 + +2.2
3,562,470 + CA264_15205 0.17 -1.1
3,562,512 + CA264_15205 0.21 -1.1
3,562,513 - CA264_15205 0.21 -0.0
3,562,612 - CA264_15205 0.30 -2.1
3,562,612 - CA264_15205 0.30 -2.4
3,562,677 - CA264_15205 0.37 -0.5
3,562,723 + CA264_15205 0.41 -2.0
3,562,767 + CA264_15205 0.45 -2.7
3,562,770 + CA264_15205 0.46 -0.6
3,562,770 + CA264_15205 0.46 -0.4
3,562,950 - CA264_15205 0.63 -1.0
3,562,969 + CA264_15205 0.65 -1.3
3,562,971 + CA264_15205 0.65 -2.1
3,562,972 - CA264_15205 0.65 -2.3
3,563,121 - CA264_15205 0.80 -1.6
3,563,186 + CA264_15205 0.86 -2.3
3,563,186 + CA264_15205 0.86 -2.2
3,563,187 - CA264_15205 0.86 +0.6

Or see this region's nucleotide sequence