Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11895

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11885 and CA264_11890 are separated by 211 nucleotidesCA264_11890 and CA264_11895 overlap by 4 nucleotidesCA264_11895 and CA264_11900 are separated by 120 nucleotidesCA264_11900 and CA264_11905 are separated by 100 nucleotides CA264_11885: CA264_11885 - site-2 protease family protein, at 2,760,767 to 2,762,053 _11885 CA264_11890: CA264_11890 - NADH oxidase, at 2,762,265 to 2,762,570 _11890 CA264_11895: CA264_11895 - T9SS C-terminal target domain-containing protein, at 2,762,567 to 2,764,378 _11895 CA264_11900: CA264_11900 - penicillin-binding protein, at 2,764,499 to 2,765,275 _11900 CA264_11905: CA264_11905 - D-alanine--D-alanine ligase, at 2,765,376 to 2,768,078 _11905 Position (kb) 2762 2763 2764 2765Strain fitness (log2 ratio) -1 0 1 2 3at 2761.575 kb on - strand, within CA264_11885at 2761.624 kb on + strand, within CA264_11885at 2761.624 kb on + strand, within CA264_11885at 2761.637 kb on + strand, within CA264_11885at 2761.638 kb on - strand, within CA264_11885at 2761.740 kb on - strand, within CA264_11885at 2761.808 kb on - strand, within CA264_11885at 2762.010 kb on + strandat 2762.117 kb on + strandat 2762.117 kb on + strandat 2762.292 kb on + strandat 2762.313 kb on - strand, within CA264_11890at 2762.332 kb on + strand, within CA264_11890at 2762.535 kb on + strand, within CA264_11890at 2762.535 kb on + strand, within CA264_11890at 2762.535 kb on + strand, within CA264_11890at 2762.549 kb on + strandat 2762.575 kb on + strandat 2762.578 kb on + strandat 2762.603 kb on - strandat 2762.603 kb on - strandat 2762.620 kb on + strandat 2762.631 kb on + strandat 2762.683 kb on - strandat 2762.865 kb on + strand, within CA264_11895at 2762.902 kb on - strand, within CA264_11895at 2762.936 kb on - strand, within CA264_11895at 2763.054 kb on + strand, within CA264_11895at 2763.065 kb on - strand, within CA264_11895at 2763.117 kb on - strand, within CA264_11895at 2763.145 kb on + strand, within CA264_11895at 2763.145 kb on + strand, within CA264_11895at 2763.146 kb on - strand, within CA264_11895at 2763.210 kb on + strand, within CA264_11895at 2763.210 kb on + strand, within CA264_11895at 2763.210 kb on + strand, within CA264_11895at 2763.211 kb on - strand, within CA264_11895at 2763.355 kb on + strand, within CA264_11895at 2763.363 kb on - strand, within CA264_11895at 2763.363 kb on - strand, within CA264_11895at 2763.363 kb on - strand, within CA264_11895at 2763.507 kb on + strand, within CA264_11895at 2763.520 kb on - strand, within CA264_11895at 2763.726 kb on + strand, within CA264_11895at 2763.922 kb on - strand, within CA264_11895at 2763.985 kb on + strand, within CA264_11895at 2763.990 kb on + strand, within CA264_11895at 2763.990 kb on + strand, within CA264_11895at 2764.039 kb on + strand, within CA264_11895at 2764.039 kb on + strand, within CA264_11895at 2764.081 kb on - strand, within CA264_11895at 2764.100 kb on + strand, within CA264_11895at 2764.286 kb on + strandat 2764.287 kb on - strandat 2764.287 kb on - strandat 2764.348 kb on + strandat 2764.348 kb on + strandat 2764.349 kb on - strandat 2764.352 kb on + strandat 2764.353 kb on - strandat 2764.353 kb on - strandat 2764.353 kb on - strandat 2764.353 kb on - strandat 2764.441 kb on + strandat 2764.500 kb on + strandat 2764.506 kb on - strandat 2765.327 kb on + strandat 2765.361 kb on - strandat 2765.361 kb on - strandat 2765.377 kb on + strandat 2765.377 kb on + strandat 2765.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,761,575 - CA264_11885 0.63 +0.2
2,761,624 + CA264_11885 0.67 -1.0
2,761,624 + CA264_11885 0.67 -0.5
2,761,637 + CA264_11885 0.68 +0.3
2,761,638 - CA264_11885 0.68 -0.8
2,761,740 - CA264_11885 0.76 -0.7
2,761,808 - CA264_11885 0.81 -1.4
2,762,010 + +0.7
2,762,117 + -0.1
2,762,117 + -0.7
2,762,292 + +2.8
2,762,313 - CA264_11890 0.16 +0.8
2,762,332 + CA264_11890 0.22 +1.9
2,762,535 + CA264_11890 0.88 -0.7
2,762,535 + CA264_11890 0.88 +0.0
2,762,535 + CA264_11890 0.88 +0.6
2,762,549 + +2.2
2,762,575 + -1.7
2,762,578 + -1.1
2,762,603 - +1.3
2,762,603 - +1.4
2,762,620 + +1.3
2,762,631 + +1.4
2,762,683 - +1.7
2,762,865 + CA264_11895 0.16 +0.9
2,762,902 - CA264_11895 0.18 +1.7
2,762,936 - CA264_11895 0.20 +1.3
2,763,054 + CA264_11895 0.27 -1.5
2,763,065 - CA264_11895 0.27 +1.5
2,763,117 - CA264_11895 0.30 +1.7
2,763,145 + CA264_11895 0.32 +1.0
2,763,145 + CA264_11895 0.32 +0.6
2,763,146 - CA264_11895 0.32 +1.0
2,763,210 + CA264_11895 0.35 +0.9
2,763,210 + CA264_11895 0.35 +1.2
2,763,210 + CA264_11895 0.35 -0.2
2,763,211 - CA264_11895 0.36 +1.1
2,763,355 + CA264_11895 0.43 +0.5
2,763,363 - CA264_11895 0.44 +1.8
2,763,363 - CA264_11895 0.44 +1.7
2,763,363 - CA264_11895 0.44 +0.8
2,763,507 + CA264_11895 0.52 +1.3
2,763,520 - CA264_11895 0.53 +2.1
2,763,726 + CA264_11895 0.64 +0.6
2,763,922 - CA264_11895 0.75 +1.5
2,763,985 + CA264_11895 0.78 +0.6
2,763,990 + CA264_11895 0.79 +0.6
2,763,990 + CA264_11895 0.79 -0.1
2,764,039 + CA264_11895 0.81 +0.5
2,764,039 + CA264_11895 0.81 +0.3
2,764,081 - CA264_11895 0.84 +2.3
2,764,100 + CA264_11895 0.85 +1.2
2,764,286 + +1.4
2,764,287 - +0.8
2,764,287 - +1.4
2,764,348 + +2.1
2,764,348 + +1.2
2,764,349 - +1.1
2,764,352 + +1.4
2,764,353 - +1.2
2,764,353 - +0.9
2,764,353 - +0.9
2,764,353 - +1.3
2,764,441 + +2.1
2,764,500 + -1.3
2,764,506 - -0.6
2,765,327 + +0.0
2,765,361 - -0.4
2,765,361 - +0.3
2,765,377 + -0.3
2,765,377 + -0.1
2,765,378 - +0.6

Or see this region's nucleotide sequence