Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11825

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11815 and CA264_11820 are separated by 126 nucleotidesCA264_11820 and CA264_11825 are separated by 49 nucleotidesCA264_11825 and CA264_11830 are separated by 204 nucleotides CA264_11815: CA264_11815 - hypothetical protein, at 2,749,833 to 2,750,219 _11815 CA264_11820: CA264_11820 - thioesterase, at 2,750,346 to 2,750,792 _11820 CA264_11825: CA264_11825 - hypothetical protein, at 2,750,842 to 2,751,939 _11825 CA264_11830: CA264_11830 - acetyl-CoA acetyltransferase, at 2,752,144 to 2,753,328 _11830 Position (kb) 2750 2751 2752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2749.858 kb on - strandat 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.875 kb on - strand, within CA264_11815at 2749.911 kb on + strand, within CA264_11815at 2749.912 kb on - strand, within CA264_11815at 2749.926 kb on + strand, within CA264_11815at 2749.927 kb on - strand, within CA264_11815at 2749.977 kb on + strand, within CA264_11815at 2750.013 kb on + strand, within CA264_11815at 2750.014 kb on - strand, within CA264_11815at 2750.023 kb on - strand, within CA264_11815at 2750.086 kb on + strand, within CA264_11815at 2750.129 kb on - strand, within CA264_11815at 2750.129 kb on - strand, within CA264_11815at 2750.145 kb on - strand, within CA264_11815at 2750.297 kb on + strandat 2750.297 kb on + strandat 2750.298 kb on - strandat 2750.329 kb on + strandat 2750.330 kb on - strandat 2750.331 kb on + strandat 2750.331 kb on + strandat 2750.335 kb on + strandat 2750.335 kb on + strandat 2750.335 kb on + strandat 2750.336 kb on - strandat 2750.337 kb on + strandat 2750.338 kb on - strandat 2750.479 kb on - strand, within CA264_11820at 2750.500 kb on + strand, within CA264_11820at 2750.501 kb on - strand, within CA264_11820at 2750.542 kb on - strand, within CA264_11820at 2750.577 kb on - strand, within CA264_11820at 2750.582 kb on + strand, within CA264_11820at 2750.618 kb on - strand, within CA264_11820at 2750.776 kb on - strandat 2750.868 kb on + strandat 2750.889 kb on + strandat 2750.889 kb on + strandat 2750.927 kb on + strandat 2751.020 kb on + strand, within CA264_11825at 2751.053 kb on + strand, within CA264_11825at 2751.054 kb on - strand, within CA264_11825at 2751.121 kb on - strand, within CA264_11825at 2751.206 kb on + strand, within CA264_11825at 2751.206 kb on + strand, within CA264_11825at 2751.207 kb on - strand, within CA264_11825at 2751.210 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825at 2751.301 kb on - strand, within CA264_11825at 2751.426 kb on + strand, within CA264_11825at 2751.585 kb on - strand, within CA264_11825at 2751.585 kb on - strand, within CA264_11825at 2751.710 kb on - strand, within CA264_11825at 2751.829 kb on - strand, within CA264_11825at 2751.898 kb on + strandat 2751.899 kb on - strandat 2751.903 kb on + strandat 2751.903 kb on + strandat 2751.925 kb on - strandat 2751.925 kb on - strandat 2751.939 kb on + strandat 2751.954 kb on + strandat 2751.954 kb on + strandat 2751.955 kb on - strandat 2751.971 kb on - strandat 2751.976 kb on + strandat 2751.978 kb on + strandat 2751.978 kb on + strandat 2751.978 kb on + strandat 2751.978 kb on + strandat 2751.979 kb on - strandat 2751.979 kb on - strandat 2752.128 kb on - strandat 2752.128 kb on - strandat 2752.160 kb on + strandat 2752.160 kb on + strandat 2752.160 kb on + strandat 2752.160 kb on + strandat 2752.160 kb on + strandat 2752.161 kb on - strandat 2752.161 kb on - strandat 2752.162 kb on + strandat 2752.163 kb on - strandat 2752.165 kb on - strandat 2752.331 kb on + strand, within CA264_11830at 2752.331 kb on + strand, within CA264_11830at 2752.332 kb on - strand, within CA264_11830at 2752.386 kb on - strand, within CA264_11830at 2752.386 kb on - strand, within CA264_11830at 2752.386 kb on - strand, within CA264_11830at 2752.393 kb on - strand, within CA264_11830at 2752.410 kb on - strand, within CA264_11830at 2752.516 kb on + strand, within CA264_11830at 2752.520 kb on - strand, within CA264_11830at 2752.603 kb on + strand, within CA264_11830at 2752.833 kb on - strand, within CA264_11830at 2752.919 kb on + strand, within CA264_11830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
2,749,858 - +0.3
2,749,872 + CA264_11815 0.10 -1.2
2,749,872 + CA264_11815 0.10 +0.3
2,749,872 + CA264_11815 0.10 -0.6
2,749,875 - CA264_11815 0.11 +0.8
2,749,911 + CA264_11815 0.20 -2.0
2,749,912 - CA264_11815 0.20 -1.7
2,749,926 + CA264_11815 0.24 -0.1
2,749,927 - CA264_11815 0.24 +1.6
2,749,977 + CA264_11815 0.37 -0.2
2,750,013 + CA264_11815 0.47 +0.9
2,750,014 - CA264_11815 0.47 -0.2
2,750,023 - CA264_11815 0.49 -0.8
2,750,086 + CA264_11815 0.65 -0.0
2,750,129 - CA264_11815 0.76 +0.3
2,750,129 - CA264_11815 0.76 -0.9
2,750,145 - CA264_11815 0.81 -0.6
2,750,297 + -0.3
2,750,297 + -0.2
2,750,298 - -0.2
2,750,329 + -0.1
2,750,330 - -1.0
2,750,331 + +0.3
2,750,331 + -0.4
2,750,335 + -0.5
2,750,335 + -0.2
2,750,335 + -0.0
2,750,336 - -0.2
2,750,337 + -0.2
2,750,338 - +0.5
2,750,479 - CA264_11820 0.30 -0.2
2,750,500 + CA264_11820 0.34 -0.3
2,750,501 - CA264_11820 0.35 +0.3
2,750,542 - CA264_11820 0.44 -1.1
2,750,577 - CA264_11820 0.52 +1.1
2,750,582 + CA264_11820 0.53 -1.5
2,750,618 - CA264_11820 0.61 +0.2
2,750,776 - -0.5
2,750,868 + +0.3
2,750,889 + -0.7
2,750,889 + +0.9
2,750,927 + -0.4
2,751,020 + CA264_11825 0.16 -0.7
2,751,053 + CA264_11825 0.19 +0.9
2,751,054 - CA264_11825 0.19 -0.3
2,751,121 - CA264_11825 0.25 +3.0
2,751,206 + CA264_11825 0.33 +0.5
2,751,206 + CA264_11825 0.33 +0.0
2,751,207 - CA264_11825 0.33 +0.3
2,751,210 - CA264_11825 0.34 +0.8
2,751,212 - CA264_11825 0.34 +0.9
2,751,212 - CA264_11825 0.34 -1.2
2,751,212 - CA264_11825 0.34 +0.2
2,751,301 - CA264_11825 0.42 +0.4
2,751,426 + CA264_11825 0.53 +0.3
2,751,585 - CA264_11825 0.68 +0.7
2,751,585 - CA264_11825 0.68 +1.9
2,751,710 - CA264_11825 0.79 -0.2
2,751,829 - CA264_11825 0.90 -0.2
2,751,898 + -0.3
2,751,899 - +2.2
2,751,903 + -1.2
2,751,903 + -0.7
2,751,925 - +0.8
2,751,925 - -0.5
2,751,939 + +0.5
2,751,954 + +0.9
2,751,954 + +0.0
2,751,955 - +0.7
2,751,971 - +0.7
2,751,976 + -1.0
2,751,978 + -0.2
2,751,978 + -1.5
2,751,978 + -0.3
2,751,978 + +0.2
2,751,979 - -0.2
2,751,979 - +0.5
2,752,128 - -0.2
2,752,128 - -0.8
2,752,160 + +2.4
2,752,160 + +2.2
2,752,160 + +1.9
2,752,160 + +1.7
2,752,160 + +2.6
2,752,161 - +2.5
2,752,161 - +2.9
2,752,162 + +3.3
2,752,163 - +2.5
2,752,165 - +2.4
2,752,331 + CA264_11830 0.16 +1.0
2,752,331 + CA264_11830 0.16 +2.0
2,752,332 - CA264_11830 0.16 +3.6
2,752,386 - CA264_11830 0.20 +2.7
2,752,386 - CA264_11830 0.20 +2.6
2,752,386 - CA264_11830 0.20 +2.4
2,752,393 - CA264_11830 0.21 +1.1
2,752,410 - CA264_11830 0.22 +1.9
2,752,516 + CA264_11830 0.31 +1.4
2,752,520 - CA264_11830 0.32 +2.5
2,752,603 + CA264_11830 0.39 +2.0
2,752,833 - CA264_11830 0.58 +2.1
2,752,919 + CA264_11830 0.65 +1.9

Or see this region's nucleotide sequence