Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11305

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11300 and CA264_11305 are separated by 151 nucleotidesCA264_11305 and CA264_11310 are separated by 81 nucleotidesCA264_11310 and CA264_11315 are separated by 33 nucleotides CA264_11300: CA264_11300 - mechanosensitive ion channel protein MscS, at 2,615,472 to 2,617,265 _11300 CA264_11305: CA264_11305 - transcriptional regulator, at 2,617,417 to 2,618,181 _11305 CA264_11310: CA264_11310 - sialate O-acetylesterase, at 2,618,263 to 2,618,964 _11310 CA264_11315: CA264_11315 - glycerophosphodiester phosphodiesterase, at 2,618,998 to 2,619,912 _11315 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -2 -1 0 1at 2616.484 kb on + strand, within CA264_11300at 2616.550 kb on + strand, within CA264_11300at 2616.550 kb on + strand, within CA264_11300at 2616.618 kb on - strand, within CA264_11300at 2616.688 kb on + strand, within CA264_11300at 2616.725 kb on + strand, within CA264_11300at 2616.764 kb on + strand, within CA264_11300at 2616.778 kb on - strand, within CA264_11300at 2616.852 kb on + strand, within CA264_11300at 2616.935 kb on - strand, within CA264_11300at 2617.024 kb on + strand, within CA264_11300at 2617.024 kb on + strand, within CA264_11300at 2617.086 kb on + strandat 2617.182 kb on - strandat 2617.288 kb on - strandat 2617.327 kb on - strandat 2617.327 kb on - strandat 2617.327 kb on - strandat 2617.338 kb on - strandat 2617.357 kb on + strandat 2617.374 kb on - strandat 2617.375 kb on + strandat 2617.376 kb on - strandat 2617.391 kb on + strandat 2617.391 kb on + strandat 2617.391 kb on + strandat 2617.421 kb on + strandat 2617.428 kb on - strandat 2617.506 kb on - strand, within CA264_11305at 2617.538 kb on + strand, within CA264_11305at 2617.539 kb on - strand, within CA264_11305at 2617.555 kb on - strand, within CA264_11305at 2617.604 kb on - strand, within CA264_11305at 2617.640 kb on + strand, within CA264_11305at 2617.640 kb on + strand, within CA264_11305at 2617.704 kb on + strand, within CA264_11305at 2617.751 kb on + strand, within CA264_11305at 2617.751 kb on + strand, within CA264_11305at 2617.752 kb on - strand, within CA264_11305at 2617.780 kb on - strand, within CA264_11305at 2617.897 kb on - strand, within CA264_11305at 2618.132 kb on - strandat 2618.202 kb on - strandat 2618.219 kb on + strandat 2618.230 kb on - strandat 2618.230 kb on - strandat 2618.397 kb on + strand, within CA264_11310at 2618.397 kb on + strand, within CA264_11310at 2618.398 kb on - strand, within CA264_11310at 2618.472 kb on - strand, within CA264_11310at 2618.525 kb on + strand, within CA264_11310at 2618.526 kb on - strand, within CA264_11310at 2618.602 kb on + strand, within CA264_11310at 2618.602 kb on + strand, within CA264_11310at 2618.603 kb on - strand, within CA264_11310at 2618.603 kb on - strand, within CA264_11310at 2618.694 kb on - strand, within CA264_11310at 2618.772 kb on + strand, within CA264_11310at 2618.772 kb on + strand, within CA264_11310at 2618.773 kb on - strand, within CA264_11310at 2618.773 kb on - strand, within CA264_11310at 2618.843 kb on + strand, within CA264_11310at 2618.847 kb on + strand, within CA264_11310at 2618.954 kb on - strandat 2619.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
2,616,484 + CA264_11300 0.56 +0.1
2,616,550 + CA264_11300 0.60 +0.2
2,616,550 + CA264_11300 0.60 +0.4
2,616,618 - CA264_11300 0.64 +1.1
2,616,688 + CA264_11300 0.68 -0.1
2,616,725 + CA264_11300 0.70 +0.3
2,616,764 + CA264_11300 0.72 +0.2
2,616,778 - CA264_11300 0.73 +0.5
2,616,852 + CA264_11300 0.77 -0.9
2,616,935 - CA264_11300 0.82 +0.6
2,617,024 + CA264_11300 0.87 +0.6
2,617,024 + CA264_11300 0.87 -1.2
2,617,086 + -1.9
2,617,182 - -0.7
2,617,288 - -1.7
2,617,327 - +1.6
2,617,327 - -0.7
2,617,327 - -0.4
2,617,338 - +1.1
2,617,357 + +0.1
2,617,374 - +0.1
2,617,375 + -2.2
2,617,376 - -0.4
2,617,391 + +0.4
2,617,391 + +0.2
2,617,391 + -0.8
2,617,421 + -0.3
2,617,428 - -0.6
2,617,506 - CA264_11305 0.12 -1.1
2,617,538 + CA264_11305 0.16 -2.2
2,617,539 - CA264_11305 0.16 -0.9
2,617,555 - CA264_11305 0.18 -1.3
2,617,604 - CA264_11305 0.24 -0.4
2,617,640 + CA264_11305 0.29 +0.0
2,617,640 + CA264_11305 0.29 -0.3
2,617,704 + CA264_11305 0.38 -0.7
2,617,751 + CA264_11305 0.44 -1.4
2,617,751 + CA264_11305 0.44 -1.5
2,617,752 - CA264_11305 0.44 -0.3
2,617,780 - CA264_11305 0.47 -2.2
2,617,897 - CA264_11305 0.63 -0.4
2,618,132 - -0.7
2,618,202 - +1.0
2,618,219 + +0.2
2,618,230 - -0.9
2,618,230 - -1.0
2,618,397 + CA264_11310 0.19 -1.5
2,618,397 + CA264_11310 0.19 +0.1
2,618,398 - CA264_11310 0.19 +1.4
2,618,472 - CA264_11310 0.30 -0.0
2,618,525 + CA264_11310 0.37 +0.6
2,618,526 - CA264_11310 0.37 +0.7
2,618,602 + CA264_11310 0.48 -0.1
2,618,602 + CA264_11310 0.48 -0.4
2,618,603 - CA264_11310 0.48 +1.0
2,618,603 - CA264_11310 0.48 +0.3
2,618,694 - CA264_11310 0.61 -0.6
2,618,772 + CA264_11310 0.73 +0.2
2,618,772 + CA264_11310 0.73 -0.5
2,618,773 - CA264_11310 0.73 -0.9
2,618,773 - CA264_11310 0.73 -0.0
2,618,843 + CA264_11310 0.83 -0.7
2,618,847 + CA264_11310 0.83 -0.2
2,618,954 - -1.6
2,619,000 - -0.6

Or see this region's nucleotide sequence