Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11275

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11265 and CA264_11270 are separated by 171 nucleotidesCA264_11270 and CA264_11275 are separated by 148 nucleotidesCA264_11275 and CA264_11280 overlap by 17 nucleotidesCA264_11280 and CA264_11285 overlap by 14 nucleotides CA264_11265: CA264_11265 - hypothetical protein, at 2,610,081 to 2,610,500 _11265 CA264_11270: CA264_11270 - hypothetical protein, at 2,610,672 to 2,611,055 _11270 CA264_11275: CA264_11275 - hypothetical protein, at 2,611,204 to 2,611,644 _11275 CA264_11280: CA264_11280 - SCO family protein, at 2,611,628 to 2,612,311 _11280 CA264_11285: CA264_11285 - cytochrome c class I, at 2,612,298 to 2,612,705 _11285 Position (kb) 2611 2612Strain fitness (log2 ratio) -2 -1 0 1 2at 2610.270 kb on + strand, within CA264_11265at 2610.333 kb on + strand, within CA264_11265at 2610.333 kb on + strand, within CA264_11265at 2610.334 kb on - strand, within CA264_11265at 2610.336 kb on - strand, within CA264_11265at 2610.451 kb on - strand, within CA264_11265at 2610.470 kb on + strandat 2610.471 kb on - strandat 2610.471 kb on - strandat 2610.498 kb on + strandat 2610.516 kb on - strandat 2610.536 kb on + strandat 2610.537 kb on - strandat 2610.537 kb on - strandat 2610.613 kb on + strandat 2610.685 kb on - strandat 2610.685 kb on - strandat 2610.685 kb on - strandat 2610.685 kb on - strandat 2610.685 kb on - strandat 2610.702 kb on - strandat 2610.726 kb on - strand, within CA264_11270at 2610.736 kb on - strand, within CA264_11270at 2610.736 kb on - strand, within CA264_11270at 2610.736 kb on - strand, within CA264_11270at 2610.740 kb on - strand, within CA264_11270at 2610.740 kb on - strand, within CA264_11270at 2610.904 kb on + strand, within CA264_11270at 2610.904 kb on + strand, within CA264_11270at 2610.996 kb on + strand, within CA264_11270at 2610.997 kb on - strand, within CA264_11270at 2611.013 kb on + strand, within CA264_11270at 2611.014 kb on - strand, within CA264_11270at 2611.014 kb on - strand, within CA264_11270at 2611.075 kb on - strandat 2611.105 kb on + strandat 2611.156 kb on + strandat 2611.156 kb on + strandat 2611.157 kb on - strandat 2611.159 kb on + strandat 2611.194 kb on + strandat 2611.194 kb on + strandat 2611.195 kb on - strandat 2611.195 kb on - strandat 2611.196 kb on + strandat 2611.196 kb on + strandat 2611.196 kb on + strandat 2611.197 kb on - strandat 2611.197 kb on - strandat 2611.197 kb on - strandat 2611.218 kb on + strandat 2611.220 kb on + strandat 2611.223 kb on - strandat 2611.247 kb on + strandat 2611.247 kb on + strandat 2611.248 kb on - strand, within CA264_11275at 2611.248 kb on - strand, within CA264_11275at 2611.350 kb on + strand, within CA264_11275at 2611.350 kb on + strand, within CA264_11275at 2611.351 kb on - strand, within CA264_11275at 2611.351 kb on - strand, within CA264_11275at 2611.541 kb on - strand, within CA264_11275at 2611.575 kb on - strand, within CA264_11275at 2611.620 kb on - strandat 2611.665 kb on + strandat 2611.704 kb on - strand, within CA264_11280at 2611.742 kb on - strand, within CA264_11280at 2611.742 kb on - strand, within CA264_11280at 2611.883 kb on + strand, within CA264_11280at 2611.965 kb on - strand, within CA264_11280at 2612.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,610,270 + CA264_11265 0.45 -1.3
2,610,333 + CA264_11265 0.60 +1.2
2,610,333 + CA264_11265 0.60 +1.3
2,610,334 - CA264_11265 0.60 -0.5
2,610,336 - CA264_11265 0.61 -0.5
2,610,451 - CA264_11265 0.88 -0.3
2,610,470 + -1.0
2,610,471 - +1.0
2,610,471 - +0.1
2,610,498 + -0.3
2,610,516 - +0.4
2,610,536 + -0.6
2,610,537 - -0.9
2,610,537 - +0.1
2,610,613 + -0.5
2,610,685 - -1.4
2,610,685 - -0.0
2,610,685 - -0.7
2,610,685 - +0.5
2,610,685 - -0.6
2,610,702 - -1.1
2,610,726 - CA264_11270 0.14 +0.5
2,610,736 - CA264_11270 0.17 -1.2
2,610,736 - CA264_11270 0.17 -2.3
2,610,736 - CA264_11270 0.17 -0.7
2,610,740 - CA264_11270 0.18 -1.5
2,610,740 - CA264_11270 0.18 +0.7
2,610,904 + CA264_11270 0.60 +0.1
2,610,904 + CA264_11270 0.60 -0.4
2,610,996 + CA264_11270 0.84 -1.7
2,610,997 - CA264_11270 0.85 -0.2
2,611,013 + CA264_11270 0.89 -0.2
2,611,014 - CA264_11270 0.89 +0.1
2,611,014 - CA264_11270 0.89 -0.5
2,611,075 - -0.8
2,611,105 + -0.6
2,611,156 + -0.8
2,611,156 + +0.5
2,611,157 - -0.0
2,611,159 + +0.8
2,611,194 + +1.6
2,611,194 + -0.2
2,611,195 - -0.9
2,611,195 - -1.5
2,611,196 + +1.6
2,611,196 + +0.4
2,611,196 + -1.3
2,611,197 - +0.1
2,611,197 - -0.3
2,611,197 - -1.7
2,611,218 + +0.1
2,611,220 + +0.0
2,611,223 - -0.5
2,611,247 + -0.7
2,611,247 + -0.6
2,611,248 - CA264_11275 0.10 -0.6
2,611,248 - CA264_11275 0.10 -0.8
2,611,350 + CA264_11275 0.33 -0.4
2,611,350 + CA264_11275 0.33 +0.3
2,611,351 - CA264_11275 0.33 -0.7
2,611,351 - CA264_11275 0.33 -0.5
2,611,541 - CA264_11275 0.76 -0.9
2,611,575 - CA264_11275 0.84 -0.9
2,611,620 - -1.2
2,611,665 + +0.8
2,611,704 - CA264_11280 0.11 +1.6
2,611,742 - CA264_11280 0.17 +1.6
2,611,742 - CA264_11280 0.17 -0.3
2,611,883 + CA264_11280 0.37 +1.9
2,611,965 - CA264_11280 0.49 +1.3
2,612,318 - -0.3

Or see this region's nucleotide sequence