Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10720

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10710 and CA264_10715 are separated by 333 nucleotidesCA264_10715 and CA264_10720 are separated by 59 nucleotidesCA264_10720 and CA264_10725 are separated by 194 nucleotides CA264_10710: CA264_10710 - response regulator, at 2,471,605 to 2,472,054 _10710 CA264_10715: CA264_10715 - hypothetical protein, at 2,472,388 to 2,472,684 _10715 CA264_10720: CA264_10720 - phenylacetic acid degradation protein PaaN, at 2,472,744 to 2,474,417 _10720 CA264_10725: CA264_10725 - T9SS C-terminal target domain-containing protein, at 2,474,612 to 2,477,902 _10725 Position (kb) 2472 2473 2474 2475Strain fitness (log2 ratio) -2 -1 0 1 2at 2471.747 kb on - strand, within CA264_10710at 2471.749 kb on - strand, within CA264_10710at 2471.786 kb on + strand, within CA264_10710at 2471.895 kb on + strand, within CA264_10710at 2471.896 kb on - strand, within CA264_10710at 2471.978 kb on + strand, within CA264_10710at 2471.979 kb on - strand, within CA264_10710at 2472.027 kb on - strandat 2472.039 kb on + strandat 2472.065 kb on + strandat 2472.066 kb on - strandat 2472.066 kb on - strandat 2472.073 kb on + strandat 2472.073 kb on + strandat 2472.074 kb on - strandat 2472.139 kb on + strandat 2472.228 kb on + strandat 2472.234 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.337 kb on - strandat 2472.339 kb on + strandat 2472.364 kb on - strandat 2472.382 kb on - strandat 2472.382 kb on - strandat 2472.388 kb on - strandat 2472.398 kb on - strandat 2472.485 kb on + strand, within CA264_10715at 2472.550 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.643 kb on - strand, within CA264_10715at 2472.702 kb on + strandat 2472.707 kb on - strandat 2472.880 kb on + strandat 2472.971 kb on - strand, within CA264_10720at 2473.123 kb on - strand, within CA264_10720at 2473.137 kb on - strand, within CA264_10720at 2473.327 kb on + strand, within CA264_10720at 2473.328 kb on - strand, within CA264_10720at 2473.328 kb on - strand, within CA264_10720at 2473.532 kb on - strand, within CA264_10720at 2473.532 kb on - strand, within CA264_10720at 2473.559 kb on - strand, within CA264_10720at 2473.564 kb on - strand, within CA264_10720at 2473.611 kb on - strand, within CA264_10720at 2473.611 kb on - strand, within CA264_10720at 2473.689 kb on + strand, within CA264_10720at 2473.690 kb on - strand, within CA264_10720at 2473.694 kb on + strand, within CA264_10720at 2473.695 kb on - strand, within CA264_10720at 2473.796 kb on + strand, within CA264_10720at 2473.862 kb on + strand, within CA264_10720at 2473.863 kb on - strand, within CA264_10720at 2473.864 kb on + strand, within CA264_10720at 2473.864 kb on + strand, within CA264_10720at 2473.865 kb on - strand, within CA264_10720at 2474.047 kb on - strand, within CA264_10720at 2474.114 kb on - strand, within CA264_10720at 2474.162 kb on - strand, within CA264_10720at 2474.244 kb on - strand, within CA264_10720at 2474.267 kb on + strandat 2474.268 kb on - strandat 2474.269 kb on + strandat 2474.269 kb on + strandat 2474.269 kb on + strandat 2474.270 kb on - strandat 2474.305 kb on + strandat 2474.306 kb on - strandat 2474.307 kb on + strandat 2474.307 kb on + strandat 2474.307 kb on + strandat 2474.307 kb on + strandat 2474.308 kb on - strandat 2474.308 kb on - strandat 2474.422 kb on - strandat 2474.518 kb on - strandat 2474.588 kb on + strandat 2474.600 kb on + strandat 2474.611 kb on - strandat 2474.635 kb on + strandat 2474.672 kb on + strandat 2474.672 kb on + strandat 2474.673 kb on - strandat 2474.677 kb on - strandat 2474.996 kb on + strandat 2474.996 kb on + strand, within CA264_10725at 2474.997 kb on - strand, within CA264_10725at 2475.012 kb on - strand, within CA264_10725at 2475.068 kb on - strand, within CA264_10725at 2475.078 kb on - strand, within CA264_10725at 2475.098 kb on + strand, within CA264_10725at 2475.098 kb on + strand, within CA264_10725at 2475.195 kb on + strand, within CA264_10725at 2475.195 kb on + strand, within CA264_10725at 2475.207 kb on - strand, within CA264_10725at 2475.252 kb on + strand, within CA264_10725at 2475.252 kb on + strand, within CA264_10725at 2475.253 kb on - strand, within CA264_10725at 2475.260 kb on + strand, within CA264_10725at 2475.403 kb on - strand, within CA264_10725at 2475.412 kb on + strand, within CA264_10725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,471,747 - CA264_10710 0.32 -0.9
2,471,749 - CA264_10710 0.32 -0.5
2,471,786 + CA264_10710 0.40 +0.8
2,471,895 + CA264_10710 0.64 -0.1
2,471,896 - CA264_10710 0.65 +1.0
2,471,978 + CA264_10710 0.83 +1.2
2,471,979 - CA264_10710 0.83 -0.7
2,472,027 - +0.2
2,472,039 + -0.0
2,472,065 + -0.1
2,472,066 - -1.6
2,472,066 - -0.3
2,472,073 + -0.8
2,472,073 + +0.4
2,472,074 - -1.0
2,472,139 + -0.1
2,472,228 + -0.5
2,472,234 - -1.2
2,472,312 - -2.0
2,472,312 - -0.7
2,472,312 - +0.1
2,472,312 - -0.9
2,472,337 - +0.6
2,472,339 + -0.8
2,472,364 - -1.9
2,472,382 - +1.0
2,472,382 - +0.2
2,472,388 - -0.6
2,472,398 - +0.4
2,472,485 + CA264_10715 0.33 -0.4
2,472,550 - CA264_10715 0.55 +0.1
2,472,643 - CA264_10715 0.86 -1.1
2,472,643 - CA264_10715 0.86 -0.3
2,472,643 - CA264_10715 0.86 -1.6
2,472,702 + +0.5
2,472,707 - +1.1
2,472,880 + +0.6
2,472,971 - CA264_10720 0.14 -0.9
2,473,123 - CA264_10720 0.23 -0.2
2,473,137 - CA264_10720 0.23 -0.3
2,473,327 + CA264_10720 0.35 +1.3
2,473,328 - CA264_10720 0.35 +0.5
2,473,328 - CA264_10720 0.35 -0.2
2,473,532 - CA264_10720 0.47 -0.3
2,473,532 - CA264_10720 0.47 +0.8
2,473,559 - CA264_10720 0.49 +0.3
2,473,564 - CA264_10720 0.49 +1.0
2,473,611 - CA264_10720 0.52 +0.7
2,473,611 - CA264_10720 0.52 +0.4
2,473,689 + CA264_10720 0.56 +2.0
2,473,690 - CA264_10720 0.57 -0.0
2,473,694 + CA264_10720 0.57 +0.7
2,473,695 - CA264_10720 0.57 +0.5
2,473,796 + CA264_10720 0.63 +0.2
2,473,862 + CA264_10720 0.67 +0.9
2,473,863 - CA264_10720 0.67 +2.2
2,473,864 + CA264_10720 0.67 +0.7
2,473,864 + CA264_10720 0.67 +0.4
2,473,865 - CA264_10720 0.67 -0.4
2,474,047 - CA264_10720 0.78 +0.5
2,474,114 - CA264_10720 0.82 -0.0
2,474,162 - CA264_10720 0.85 +1.1
2,474,244 - CA264_10720 0.90 +0.7
2,474,267 + +1.8
2,474,268 - +0.8
2,474,269 + +1.6
2,474,269 + +0.5
2,474,269 + -0.5
2,474,270 - +0.5
2,474,305 + +0.4
2,474,306 - +0.2
2,474,307 + +0.6
2,474,307 + +0.4
2,474,307 + -0.7
2,474,307 + +0.5
2,474,308 - -0.4
2,474,308 - +0.7
2,474,422 - -0.8
2,474,518 - -0.6
2,474,588 + -1.4
2,474,600 + -0.9
2,474,611 - +0.4
2,474,635 + -0.0
2,474,672 + -0.5
2,474,672 + +0.0
2,474,673 - -1.3
2,474,677 - -2.6
2,474,996 + +2.6
2,474,996 + CA264_10725 0.12 +0.2
2,474,997 - CA264_10725 0.12 +0.1
2,475,012 - CA264_10725 0.12 -0.6
2,475,068 - CA264_10725 0.14 +1.7
2,475,078 - CA264_10725 0.14 -0.2
2,475,098 + CA264_10725 0.15 -1.1
2,475,098 + CA264_10725 0.15 +0.2
2,475,195 + CA264_10725 0.18 -1.4
2,475,195 + CA264_10725 0.18 +0.2
2,475,207 - CA264_10725 0.18 +0.4
2,475,252 + CA264_10725 0.19 +1.6
2,475,252 + CA264_10725 0.19 -0.5
2,475,253 - CA264_10725 0.19 -0.4
2,475,260 + CA264_10725 0.20 -0.5
2,475,403 - CA264_10725 0.24 -1.9
2,475,412 + CA264_10725 0.24 +0.1

Or see this region's nucleotide sequence