Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09550

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09540 and CA264_09545 are separated by 147 nucleotidesCA264_09545 and CA264_09550 are separated by 113 nucleotidesCA264_09550 and CA264_09555 are separated by 58 nucleotides CA264_09540: CA264_09540 - sodium:proton exchanger, at 2,227,503 to 2,228,453 _09540 CA264_09545: CA264_09545 - hypothetical protein, at 2,228,601 to 2,228,960 _09545 CA264_09550: CA264_09550 - hypothetical protein, at 2,229,074 to 2,229,727 _09550 CA264_09555: CA264_09555 - potassium transporter Kup, at 2,229,786 to 2,231,723 _09555 Position (kb) 2229 2230Strain fitness (log2 ratio) -2 -1 0 1 2at 2228.237 kb on + strand, within CA264_09540at 2228.246 kb on + strand, within CA264_09540at 2228.246 kb on + strand, within CA264_09540at 2228.247 kb on - strand, within CA264_09540at 2228.313 kb on - strand, within CA264_09540at 2228.328 kb on - strand, within CA264_09540at 2228.328 kb on - strand, within CA264_09540at 2228.330 kb on + strand, within CA264_09540at 2228.331 kb on - strand, within CA264_09540at 2228.336 kb on - strand, within CA264_09540at 2228.361 kb on - strandat 2228.361 kb on - strandat 2228.431 kb on - strandat 2228.447 kb on - strandat 2228.479 kb on + strandat 2228.610 kb on - strandat 2228.615 kb on + strandat 2228.615 kb on + strandat 2228.615 kb on + strandat 2228.616 kb on - strandat 2228.616 kb on - strandat 2228.616 kb on - strandat 2228.627 kb on + strandat 2228.848 kb on + strand, within CA264_09545at 2228.936 kb on + strandat 2228.936 kb on + strandat 2228.949 kb on - strandat 2228.949 kb on - strandat 2228.978 kb on - strandat 2229.018 kb on + strandat 2229.018 kb on + strandat 2229.038 kb on + strandat 2229.039 kb on - strandat 2229.147 kb on - strand, within CA264_09550at 2229.279 kb on + strand, within CA264_09550at 2229.280 kb on - strand, within CA264_09550at 2229.285 kb on + strand, within CA264_09550at 2229.342 kb on - strand, within CA264_09550at 2229.462 kb on - strand, within CA264_09550at 2229.473 kb on - strand, within CA264_09550at 2229.473 kb on - strand, within CA264_09550at 2229.656 kb on - strand, within CA264_09550at 2229.656 kb on - strand, within CA264_09550at 2229.672 kb on + strandat 2229.764 kb on + strandat 2229.852 kb on + strandat 2229.911 kb on + strandat 2229.930 kb on + strandat 2229.938 kb on + strandat 2229.940 kb on + strandat 2229.941 kb on - strandat 2229.974 kb on + strandat 2229.977 kb on + strandat 2229.980 kb on - strand, within CA264_09555at 2229.980 kb on - strand, within CA264_09555at 2229.980 kb on - strand, within CA264_09555at 2229.984 kb on + strand, within CA264_09555at 2230.085 kb on + strand, within CA264_09555at 2230.085 kb on + strand, within CA264_09555at 2230.086 kb on - strand, within CA264_09555at 2230.118 kb on + strand, within CA264_09555at 2230.118 kb on + strand, within CA264_09555at 2230.119 kb on - strand, within CA264_09555at 2230.119 kb on - strand, within CA264_09555at 2230.151 kb on + strand, within CA264_09555at 2230.154 kb on - strand, within CA264_09555at 2230.174 kb on - strand, within CA264_09555at 2230.181 kb on + strand, within CA264_09555at 2230.256 kb on - strand, within CA264_09555at 2230.292 kb on + strand, within CA264_09555at 2230.366 kb on - strand, within CA264_09555at 2230.371 kb on + strand, within CA264_09555at 2230.371 kb on + strand, within CA264_09555at 2230.372 kb on - strand, within CA264_09555at 2230.372 kb on - strand, within CA264_09555at 2230.372 kb on - strand, within CA264_09555at 2230.386 kb on + strand, within CA264_09555at 2230.386 kb on + strand, within CA264_09555at 2230.387 kb on - strand, within CA264_09555at 2230.387 kb on - strand, within CA264_09555at 2230.387 kb on - strand, within CA264_09555at 2230.431 kb on - strand, within CA264_09555at 2230.453 kb on - strand, within CA264_09555at 2230.484 kb on + strand, within CA264_09555at 2230.525 kb on + strand, within CA264_09555at 2230.576 kb on + strand, within CA264_09555at 2230.577 kb on - strand, within CA264_09555at 2230.594 kb on - strand, within CA264_09555at 2230.694 kb on + strand, within CA264_09555at 2230.694 kb on + strand, within CA264_09555

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,228,237 + CA264_09540 0.77 +1.2
2,228,246 + CA264_09540 0.78 +0.4
2,228,246 + CA264_09540 0.78 +1.2
2,228,247 - CA264_09540 0.78 +0.2
2,228,313 - CA264_09540 0.85 -0.9
2,228,328 - CA264_09540 0.87 -0.4
2,228,328 - CA264_09540 0.87 -0.4
2,228,330 + CA264_09540 0.87 +0.4
2,228,331 - CA264_09540 0.87 +0.1
2,228,336 - CA264_09540 0.88 +0.2
2,228,361 - -2.2
2,228,361 - -0.1
2,228,431 - +1.0
2,228,447 - -0.4
2,228,479 + -0.5
2,228,610 - -0.3
2,228,615 + +0.9
2,228,615 + -0.1
2,228,615 + -0.5
2,228,616 - -0.6
2,228,616 - -0.1
2,228,616 - +0.1
2,228,627 + -0.4
2,228,848 + CA264_09545 0.69 -0.4
2,228,936 + -1.1
2,228,936 + +0.3
2,228,949 - -0.3
2,228,949 - -0.2
2,228,978 - -0.2
2,229,018 + +0.2
2,229,018 + +0.8
2,229,038 + -0.0
2,229,039 - +0.2
2,229,147 - CA264_09550 0.11 +0.9
2,229,279 + CA264_09550 0.31 +0.2
2,229,280 - CA264_09550 0.31 +0.6
2,229,285 + CA264_09550 0.32 -0.8
2,229,342 - CA264_09550 0.41 -0.6
2,229,462 - CA264_09550 0.59 +2.4
2,229,473 - CA264_09550 0.61 -0.5
2,229,473 - CA264_09550 0.61 +0.4
2,229,656 - CA264_09550 0.89 +0.4
2,229,656 - CA264_09550 0.89 +0.4
2,229,672 + -0.6
2,229,764 + -0.0
2,229,852 + -0.5
2,229,911 + -0.7
2,229,930 + +0.1
2,229,938 + -1.2
2,229,940 + -1.1
2,229,941 - -0.8
2,229,974 + -0.1
2,229,977 + -0.5
2,229,980 - CA264_09555 0.10 -1.0
2,229,980 - CA264_09555 0.10 -0.9
2,229,980 - CA264_09555 0.10 +0.5
2,229,984 + CA264_09555 0.10 -0.4
2,230,085 + CA264_09555 0.15 -0.3
2,230,085 + CA264_09555 0.15 -1.3
2,230,086 - CA264_09555 0.15 +0.2
2,230,118 + CA264_09555 0.17 -0.4
2,230,118 + CA264_09555 0.17 -0.9
2,230,119 - CA264_09555 0.17 -0.6
2,230,119 - CA264_09555 0.17 +1.6
2,230,151 + CA264_09555 0.19 -1.3
2,230,154 - CA264_09555 0.19 +0.4
2,230,174 - CA264_09555 0.20 -0.5
2,230,181 + CA264_09555 0.20 -0.0
2,230,256 - CA264_09555 0.24 -0.1
2,230,292 + CA264_09555 0.26 -0.3
2,230,366 - CA264_09555 0.30 +0.7
2,230,371 + CA264_09555 0.30 -0.0
2,230,371 + CA264_09555 0.30 +0.4
2,230,372 - CA264_09555 0.30 +0.1
2,230,372 - CA264_09555 0.30 +0.0
2,230,372 - CA264_09555 0.30 -0.8
2,230,386 + CA264_09555 0.31 -0.5
2,230,386 + CA264_09555 0.31 +0.4
2,230,387 - CA264_09555 0.31 -0.6
2,230,387 - CA264_09555 0.31 -0.1
2,230,387 - CA264_09555 0.31 +0.1
2,230,431 - CA264_09555 0.33 +0.6
2,230,453 - CA264_09555 0.34 +0.1
2,230,484 + CA264_09555 0.36 -0.9
2,230,525 + CA264_09555 0.38 -1.0
2,230,576 + CA264_09555 0.41 -0.4
2,230,577 - CA264_09555 0.41 -0.9
2,230,594 - CA264_09555 0.42 +0.3
2,230,694 + CA264_09555 0.47 -1.0
2,230,694 + CA264_09555 0.47 -1.2

Or see this region's nucleotide sequence