Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09190

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09180 and CA264_09185 are separated by 352 nucleotidesCA264_09185 and CA264_09190 overlap by 4 nucleotidesCA264_09190 and CA264_09195 are separated by 8 nucleotides CA264_09180: CA264_09180 - DNA-binding response regulator, at 2,150,931 to 2,151,581 _09180 CA264_09185: CA264_09185 - hypothetical protein, at 2,151,934 to 2,152,476 _09185 CA264_09190: CA264_09190 - hypothetical protein, at 2,152,473 to 2,152,808 _09190 CA264_09195: CA264_09195 - hypothetical protein, at 2,152,817 to 2,154,802 _09195 Position (kb) 2152 2153Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2151.499 kb on - strand, within CA264_09180at 2151.499 kb on - strand, within CA264_09180at 2151.576 kb on - strandat 2151.581 kb on + strandat 2151.593 kb on + strandat 2151.594 kb on - strandat 2151.594 kb on - strandat 2151.624 kb on - strandat 2151.627 kb on - strandat 2151.765 kb on - strandat 2151.767 kb on - strandat 2151.776 kb on + strandat 2151.810 kb on - strandat 2151.882 kb on + strandat 2151.894 kb on + strandat 2151.900 kb on + strandat 2151.901 kb on - strandat 2151.992 kb on - strand, within CA264_09185at 2152.037 kb on + strand, within CA264_09185at 2152.037 kb on + strand, within CA264_09185at 2152.063 kb on - strand, within CA264_09185at 2152.154 kb on + strand, within CA264_09185at 2152.305 kb on + strand, within CA264_09185at 2152.306 kb on - strand, within CA264_09185at 2152.374 kb on + strand, within CA264_09185at 2152.377 kb on - strand, within CA264_09185at 2152.456 kb on - strandat 2152.485 kb on + strandat 2152.485 kb on + strandat 2152.486 kb on - strandat 2152.487 kb on + strandat 2152.488 kb on - strandat 2152.550 kb on + strand, within CA264_09190at 2152.600 kb on + strand, within CA264_09190at 2152.601 kb on - strand, within CA264_09190at 2152.606 kb on + strand, within CA264_09190at 2152.692 kb on - strand, within CA264_09190at 2152.719 kb on + strand, within CA264_09190at 2152.720 kb on - strand, within CA264_09190at 2152.720 kb on - strand, within CA264_09190at 2152.819 kb on - strandat 2152.819 kb on - strandat 2152.819 kb on - strandat 2152.819 kb on - strandat 2152.838 kb on + strandat 2152.924 kb on + strandat 2153.075 kb on - strand, within CA264_09195at 2153.075 kb on - strand, within CA264_09195at 2153.075 kb on - strand, within CA264_09195at 2153.088 kb on - strand, within CA264_09195at 2153.088 kb on - strand, within CA264_09195at 2153.143 kb on + strand, within CA264_09195at 2153.144 kb on - strand, within CA264_09195at 2153.146 kb on + strand, within CA264_09195at 2153.147 kb on - strand, within CA264_09195at 2153.277 kb on - strand, within CA264_09195at 2153.346 kb on + strand, within CA264_09195at 2153.347 kb on - strand, within CA264_09195at 2153.431 kb on + strand, within CA264_09195at 2153.432 kb on - strand, within CA264_09195at 2153.474 kb on + strand, within CA264_09195at 2153.474 kb on + strand, within CA264_09195at 2153.585 kb on - strand, within CA264_09195at 2153.660 kb on + strand, within CA264_09195at 2153.661 kb on - strand, within CA264_09195at 2153.661 kb on - strand, within CA264_09195at 2153.683 kb on + strand, within CA264_09195at 2153.683 kb on + strand, within CA264_09195at 2153.684 kb on - strand, within CA264_09195at 2153.684 kb on - strand, within CA264_09195at 2153.721 kb on + strand, within CA264_09195at 2153.722 kb on - strand, within CA264_09195at 2153.722 kb on - strand, within CA264_09195at 2153.722 kb on - strand, within CA264_09195at 2153.722 kb on - strand, within CA264_09195at 2153.722 kb on - strand, within CA264_09195at 2153.724 kb on - strand, within CA264_09195at 2153.751 kb on + strand, within CA264_09195at 2153.751 kb on + strand, within CA264_09195at 2153.755 kb on - strand, within CA264_09195at 2153.798 kb on + strand, within CA264_09195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,151,499 - CA264_09180 0.87 +0.2
2,151,499 - CA264_09180 0.87 -0.5
2,151,576 - +1.8
2,151,581 + +2.7
2,151,593 + +3.9
2,151,594 - -0.2
2,151,594 - +0.2
2,151,624 - +0.7
2,151,627 - +0.5
2,151,765 - +0.6
2,151,767 - +0.6
2,151,776 + +3.0
2,151,810 - +1.2
2,151,882 + +2.6
2,151,894 + +3.7
2,151,900 + +3.1
2,151,901 - +0.8
2,151,992 - CA264_09185 0.11 +2.5
2,152,037 + CA264_09185 0.19 +2.8
2,152,037 + CA264_09185 0.19 +2.7
2,152,063 - CA264_09185 0.24 +0.6
2,152,154 + CA264_09185 0.41 +1.6
2,152,305 + CA264_09185 0.68 +1.0
2,152,306 - CA264_09185 0.69 +1.8
2,152,374 + CA264_09185 0.81 +2.5
2,152,377 - CA264_09185 0.82 +2.8
2,152,456 - +0.4
2,152,485 + +1.0
2,152,485 + -0.2
2,152,486 - +0.2
2,152,487 + -0.3
2,152,488 - +1.2
2,152,550 + CA264_09190 0.23 -0.9
2,152,600 + CA264_09190 0.38 +0.0
2,152,601 - CA264_09190 0.38 -0.3
2,152,606 + CA264_09190 0.40 -1.2
2,152,692 - CA264_09190 0.65 -0.2
2,152,719 + CA264_09190 0.73 -1.4
2,152,720 - CA264_09190 0.74 -0.3
2,152,720 - CA264_09190 0.74 -0.6
2,152,819 - +1.7
2,152,819 - +0.2
2,152,819 - +0.0
2,152,819 - -0.5
2,152,838 + +0.7
2,152,924 + +0.2
2,153,075 - CA264_09195 0.13 +0.1
2,153,075 - CA264_09195 0.13 -0.9
2,153,075 - CA264_09195 0.13 -0.6
2,153,088 - CA264_09195 0.14 +0.0
2,153,088 - CA264_09195 0.14 -0.2
2,153,143 + CA264_09195 0.16 +0.0
2,153,144 - CA264_09195 0.16 -1.0
2,153,146 + CA264_09195 0.17 -0.6
2,153,147 - CA264_09195 0.17 -1.2
2,153,277 - CA264_09195 0.23 -0.3
2,153,346 + CA264_09195 0.27 -0.1
2,153,347 - CA264_09195 0.27 -0.1
2,153,431 + CA264_09195 0.31 -0.5
2,153,432 - CA264_09195 0.31 -0.7
2,153,474 + CA264_09195 0.33 -0.0
2,153,474 + CA264_09195 0.33 -0.4
2,153,585 - CA264_09195 0.39 -0.1
2,153,660 + CA264_09195 0.42 +0.1
2,153,661 - CA264_09195 0.42 -0.7
2,153,661 - CA264_09195 0.42 +0.1
2,153,683 + CA264_09195 0.44 -0.0
2,153,683 + CA264_09195 0.44 +1.3
2,153,684 - CA264_09195 0.44 -0.5
2,153,684 - CA264_09195 0.44 -1.8
2,153,721 + CA264_09195 0.46 -0.2
2,153,722 - CA264_09195 0.46 -0.6
2,153,722 - CA264_09195 0.46 -0.7
2,153,722 - CA264_09195 0.46 -0.7
2,153,722 - CA264_09195 0.46 +0.1
2,153,722 - CA264_09195 0.46 -0.3
2,153,724 - CA264_09195 0.46 +0.5
2,153,751 + CA264_09195 0.47 -0.4
2,153,751 + CA264_09195 0.47 -2.5
2,153,755 - CA264_09195 0.47 -0.2
2,153,798 + CA264_09195 0.49 +0.3

Or see this region's nucleotide sequence