Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07605

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07600 and CA264_07605 are separated by 42 nucleotidesCA264_07605 and CA264_07610 are separated by 24 nucleotidesCA264_07610 and CA264_07615 are separated by 2 nucleotides CA264_07600: CA264_07600 - chemotaxis response regulator protein-glutamate methylesterase, at 1,761,784 to 1,762,920 _07600 CA264_07605: CA264_07605 - response regulator, at 1,762,963 to 1,763,325 _07605 CA264_07610: CA264_07610 - chemotaxis protein CheW, at 1,763,350 to 1,763,949 _07610 CA264_07615: CA264_07615 - Two-component hybrid sensor and regulator, at 1,763,952 to 1,768,475 _07615 Position (kb) 1762 1763 1764Strain fitness (log2 ratio) -2 -1 0 1at 1761.969 kb on + strand, within CA264_07600at 1761.970 kb on - strand, within CA264_07600at 1761.970 kb on - strand, within CA264_07600at 1761.992 kb on + strand, within CA264_07600at 1761.992 kb on + strand, within CA264_07600at 1761.993 kb on - strand, within CA264_07600at 1761.993 kb on - strand, within CA264_07600at 1761.993 kb on - strand, within CA264_07600at 1762.129 kb on - strand, within CA264_07600at 1762.142 kb on - strand, within CA264_07600at 1762.161 kb on + strand, within CA264_07600at 1762.198 kb on + strand, within CA264_07600at 1762.283 kb on + strand, within CA264_07600at 1762.410 kb on + strand, within CA264_07600at 1762.410 kb on + strand, within CA264_07600at 1762.503 kb on - strand, within CA264_07600at 1762.529 kb on - strand, within CA264_07600at 1762.553 kb on - strand, within CA264_07600at 1762.554 kb on + strand, within CA264_07600at 1762.554 kb on + strand, within CA264_07600at 1762.562 kb on + strand, within CA264_07600at 1762.563 kb on - strand, within CA264_07600at 1762.563 kb on - strand, within CA264_07600at 1762.661 kb on - strand, within CA264_07600at 1762.864 kb on + strandat 1762.864 kb on + strandat 1762.865 kb on - strandat 1762.865 kb on - strandat 1762.868 kb on + strandat 1762.878 kb on + strandat 1763.028 kb on - strand, within CA264_07605at 1763.059 kb on + strand, within CA264_07605at 1763.131 kb on + strand, within CA264_07605at 1763.131 kb on + strand, within CA264_07605at 1763.204 kb on - strand, within CA264_07605at 1763.331 kb on + strandat 1763.337 kb on - strandat 1763.351 kb on + strandat 1763.352 kb on - strandat 1763.352 kb on - strandat 1763.371 kb on + strandat 1763.372 kb on - strandat 1763.448 kb on + strand, within CA264_07610at 1763.546 kb on - strand, within CA264_07610at 1763.551 kb on + strand, within CA264_07610at 1763.558 kb on + strand, within CA264_07610at 1763.664 kb on + strand, within CA264_07610at 1763.664 kb on + strand, within CA264_07610at 1763.665 kb on - strand, within CA264_07610at 1763.695 kb on + strand, within CA264_07610at 1763.752 kb on + strand, within CA264_07610at 1763.953 kb on + strandat 1763.954 kb on - strandat 1763.954 kb on - strandat 1764.093 kb on + strandat 1764.110 kb on + strandat 1764.129 kb on - strandat 1764.277 kb on + strandat 1764.277 kb on + strandat 1764.277 kb on + strandat 1764.278 kb on - strandat 1764.285 kb on + strandat 1764.285 kb on + strandat 1764.285 kb on + strandat 1764.285 kb on + strandat 1764.286 kb on - strandat 1764.286 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
1,761,969 + CA264_07600 0.16 -0.0
1,761,970 - CA264_07600 0.16 +0.2
1,761,970 - CA264_07600 0.16 -0.1
1,761,992 + CA264_07600 0.18 -0.3
1,761,992 + CA264_07600 0.18 +0.2
1,761,993 - CA264_07600 0.18 -1.2
1,761,993 - CA264_07600 0.18 +0.4
1,761,993 - CA264_07600 0.18 +0.1
1,762,129 - CA264_07600 0.30 +1.4
1,762,142 - CA264_07600 0.31 +0.2
1,762,161 + CA264_07600 0.33 -0.1
1,762,198 + CA264_07600 0.36 -0.8
1,762,283 + CA264_07600 0.44 -0.1
1,762,410 + CA264_07600 0.55 -0.7
1,762,410 + CA264_07600 0.55 -0.5
1,762,503 - CA264_07600 0.63 -0.8
1,762,529 - CA264_07600 0.66 -0.4
1,762,553 - CA264_07600 0.68 +0.1
1,762,554 + CA264_07600 0.68 -0.1
1,762,554 + CA264_07600 0.68 -0.7
1,762,562 + CA264_07600 0.68 -0.0
1,762,563 - CA264_07600 0.69 -1.5
1,762,563 - CA264_07600 0.69 -0.2
1,762,661 - CA264_07600 0.77 -0.0
1,762,864 + -0.1
1,762,864 + +1.3
1,762,865 - -2.5
1,762,865 - -0.4
1,762,868 + -0.1
1,762,878 + -0.2
1,763,028 - CA264_07605 0.18 -1.4
1,763,059 + CA264_07605 0.26 +0.3
1,763,131 + CA264_07605 0.46 -0.3
1,763,131 + CA264_07605 0.46 -0.6
1,763,204 - CA264_07605 0.66 -0.7
1,763,331 + -0.4
1,763,337 - -0.5
1,763,351 + -0.2
1,763,352 - -0.1
1,763,352 - -1.0
1,763,371 + -0.9
1,763,372 - +0.5
1,763,448 + CA264_07610 0.16 +0.4
1,763,546 - CA264_07610 0.33 -0.1
1,763,551 + CA264_07610 0.34 -0.1
1,763,558 + CA264_07610 0.35 +1.2
1,763,664 + CA264_07610 0.52 +0.8
1,763,664 + CA264_07610 0.52 -0.1
1,763,665 - CA264_07610 0.53 -0.7
1,763,695 + CA264_07610 0.57 -0.9
1,763,752 + CA264_07610 0.67 +0.3
1,763,953 + +0.4
1,763,954 - -1.0
1,763,954 - +0.7
1,764,093 + +0.8
1,764,110 + +0.1
1,764,129 - +1.3
1,764,277 + -0.2
1,764,277 + +0.2
1,764,277 + -0.5
1,764,278 - -0.3
1,764,285 + -1.2
1,764,285 + +0.5
1,764,285 + -0.6
1,764,285 + -0.4
1,764,286 - +0.2
1,764,286 - -0.1

Or see this region's nucleotide sequence