Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06480

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06470 and CA264_06475 are separated by 112 nucleotidesCA264_06475 and CA264_06480 are separated by 77 nucleotidesCA264_06480 and CA264_06485 are separated by 74 nucleotidesCA264_06485 and CA264_06490 are separated by 37 nucleotides CA264_06470: CA264_06470 - YfcE family phosphodiesterase, at 1,496,959 to 1,497,459 _06470 CA264_06475: CA264_06475 - hypothetical protein, at 1,497,572 to 1,497,763 _06475 CA264_06480: CA264_06480 - threonine aldolase, at 1,497,841 to 1,498,887 _06480 CA264_06485: CA264_06485 - Fe-S cluster assembly protein HesB, at 1,498,962 to 1,499,591 _06485 CA264_06490: CA264_06490 - DNA topoisomerase I, at 1,499,629 to 1,500,714 _06490 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1496.844 kb on + strandat 1496.902 kb on + strandat 1496.911 kb on - strandat 1496.911 kb on - strandat 1496.958 kb on + strandat 1496.958 kb on + strandat 1497.115 kb on + strand, within CA264_06470at 1497.125 kb on + strand, within CA264_06470at 1497.125 kb on + strand, within CA264_06470at 1497.126 kb on - strand, within CA264_06470at 1497.126 kb on - strand, within CA264_06470at 1497.126 kb on - strand, within CA264_06470at 1497.150 kb on - strand, within CA264_06470at 1497.226 kb on + strand, within CA264_06470at 1497.227 kb on - strand, within CA264_06470at 1497.251 kb on + strand, within CA264_06470at 1497.252 kb on - strand, within CA264_06470at 1497.399 kb on + strand, within CA264_06470at 1497.551 kb on + strandat 1497.551 kb on + strandat 1497.552 kb on - strandat 1497.701 kb on + strand, within CA264_06475at 1497.752 kb on - strandat 1497.844 kb on + strandat 1497.845 kb on + strandat 1497.845 kb on + strandat 1497.849 kb on + strandat 1497.849 kb on + strandat 1497.855 kb on - strandat 1498.047 kb on + strand, within CA264_06480at 1498.076 kb on + strand, within CA264_06480at 1498.076 kb on + strand, within CA264_06480at 1498.173 kb on + strand, within CA264_06480at 1498.218 kb on + strand, within CA264_06480at 1498.295 kb on + strand, within CA264_06480at 1498.322 kb on + strand, within CA264_06480at 1498.322 kb on + strand, within CA264_06480at 1498.323 kb on - strand, within CA264_06480at 1498.323 kb on - strand, within CA264_06480at 1498.323 kb on - strand, within CA264_06480at 1498.396 kb on - strand, within CA264_06480at 1498.409 kb on - strand, within CA264_06480at 1498.415 kb on + strand, within CA264_06480at 1498.415 kb on + strand, within CA264_06480at 1498.415 kb on + strand, within CA264_06480at 1498.415 kb on + strand, within CA264_06480at 1498.416 kb on - strand, within CA264_06480at 1498.417 kb on + strand, within CA264_06480at 1498.426 kb on - strand, within CA264_06480at 1498.455 kb on - strand, within CA264_06480at 1498.482 kb on - strand, within CA264_06480at 1498.576 kb on + strand, within CA264_06480at 1498.577 kb on - strand, within CA264_06480at 1498.596 kb on - strand, within CA264_06480at 1498.661 kb on - strand, within CA264_06480at 1498.661 kb on - strand, within CA264_06480at 1498.664 kb on + strand, within CA264_06480at 1498.664 kb on + strand, within CA264_06480at 1498.665 kb on - strand, within CA264_06480at 1498.665 kb on - strand, within CA264_06480at 1498.665 kb on - strand, within CA264_06480at 1498.686 kb on + strand, within CA264_06480at 1498.764 kb on - strand, within CA264_06480at 1498.764 kb on - strand, within CA264_06480at 1498.764 kb on - strand, within CA264_06480at 1498.794 kb on - strandat 1498.841 kb on + strandat 1499.026 kb on + strand, within CA264_06485at 1499.033 kb on + strand, within CA264_06485at 1499.036 kb on + strand, within CA264_06485at 1499.081 kb on - strand, within CA264_06485at 1499.083 kb on - strand, within CA264_06485at 1499.102 kb on + strand, within CA264_06485at 1499.102 kb on + strand, within CA264_06485at 1499.103 kb on - strand, within CA264_06485at 1499.156 kb on + strand, within CA264_06485at 1499.179 kb on - strand, within CA264_06485at 1499.197 kb on + strand, within CA264_06485at 1499.201 kb on - strand, within CA264_06485at 1499.201 kb on - strand, within CA264_06485at 1499.236 kb on + strand, within CA264_06485at 1499.257 kb on - strand, within CA264_06485at 1499.259 kb on - strand, within CA264_06485at 1499.264 kb on + strand, within CA264_06485at 1499.365 kb on + strand, within CA264_06485at 1499.404 kb on + strand, within CA264_06485at 1499.437 kb on + strand, within CA264_06485at 1499.466 kb on + strand, within CA264_06485at 1499.466 kb on + strand, within CA264_06485at 1499.495 kb on - strand, within CA264_06485at 1499.495 kb on - strand, within CA264_06485at 1499.540 kb on + strandat 1499.552 kb on + strandat 1499.553 kb on - strandat 1499.557 kb on - strandat 1499.557 kb on - strandat 1499.623 kb on - strandat 1499.623 kb on - strandat 1499.630 kb on + strandat 1499.630 kb on + strandat 1499.674 kb on + strandat 1499.697 kb on + strandat 1499.697 kb on + strandat 1499.742 kb on - strand, within CA264_06490at 1499.763 kb on + strand, within CA264_06490at 1499.788 kb on + strand, within CA264_06490at 1499.788 kb on + strand, within CA264_06490at 1499.789 kb on - strand, within CA264_06490at 1499.789 kb on - strand, within CA264_06490at 1499.793 kb on - strand, within CA264_06490at 1499.793 kb on - strand, within CA264_06490at 1499.795 kb on + strand, within CA264_06490at 1499.796 kb on - strand, within CA264_06490at 1499.811 kb on + strand, within CA264_06490at 1499.860 kb on - strand, within CA264_06490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,496,844 + +2.6
1,496,902 + +1.0
1,496,911 - -1.0
1,496,911 - -0.5
1,496,958 + +2.2
1,496,958 + +2.0
1,497,115 + CA264_06470 0.31 +2.3
1,497,125 + CA264_06470 0.33 +3.0
1,497,125 + CA264_06470 0.33 +2.1
1,497,126 - CA264_06470 0.33 -0.4
1,497,126 - CA264_06470 0.33 -0.2
1,497,126 - CA264_06470 0.33 +0.3
1,497,150 - CA264_06470 0.38 -0.8
1,497,226 + CA264_06470 0.53 +1.6
1,497,227 - CA264_06470 0.53 -0.4
1,497,251 + CA264_06470 0.58 +1.9
1,497,252 - CA264_06470 0.58 -1.3
1,497,399 + CA264_06470 0.88 +2.6
1,497,551 + +2.3
1,497,551 + +2.4
1,497,552 - +3.0
1,497,701 + CA264_06475 0.67 +2.2
1,497,752 - +2.5
1,497,844 + -0.1
1,497,845 + -0.4
1,497,845 + +0.1
1,497,849 + -0.4
1,497,849 + +0.6
1,497,855 - -0.7
1,498,047 + CA264_06480 0.20 -1.2
1,498,076 + CA264_06480 0.22 -0.5
1,498,076 + CA264_06480 0.22 -1.3
1,498,173 + CA264_06480 0.32 +1.1
1,498,218 + CA264_06480 0.36 +0.5
1,498,295 + CA264_06480 0.43 -1.3
1,498,322 + CA264_06480 0.46 -0.0
1,498,322 + CA264_06480 0.46 +0.0
1,498,323 - CA264_06480 0.46 -0.4
1,498,323 - CA264_06480 0.46 -0.3
1,498,323 - CA264_06480 0.46 -0.3
1,498,396 - CA264_06480 0.53 -0.4
1,498,409 - CA264_06480 0.54 -0.1
1,498,415 + CA264_06480 0.55 -0.9
1,498,415 + CA264_06480 0.55 +0.8
1,498,415 + CA264_06480 0.55 -0.4
1,498,415 + CA264_06480 0.55 -0.6
1,498,416 - CA264_06480 0.55 +0.1
1,498,417 + CA264_06480 0.55 -1.5
1,498,426 - CA264_06480 0.56 +1.3
1,498,455 - CA264_06480 0.59 +0.2
1,498,482 - CA264_06480 0.61 -0.3
1,498,576 + CA264_06480 0.70 +0.6
1,498,577 - CA264_06480 0.70 -0.1
1,498,596 - CA264_06480 0.72 -0.1
1,498,661 - CA264_06480 0.78 -0.7
1,498,661 - CA264_06480 0.78 -0.4
1,498,664 + CA264_06480 0.79 -0.2
1,498,664 + CA264_06480 0.79 -1.0
1,498,665 - CA264_06480 0.79 +0.3
1,498,665 - CA264_06480 0.79 -0.4
1,498,665 - CA264_06480 0.79 -0.6
1,498,686 + CA264_06480 0.81 +0.5
1,498,764 - CA264_06480 0.88 -0.1
1,498,764 - CA264_06480 0.88 -0.2
1,498,764 - CA264_06480 0.88 -0.2
1,498,794 - -0.1
1,498,841 + +0.8
1,499,026 + CA264_06485 0.10 -1.2
1,499,033 + CA264_06485 0.11 -0.2
1,499,036 + CA264_06485 0.12 +0.3
1,499,081 - CA264_06485 0.19 -0.9
1,499,083 - CA264_06485 0.19 -0.1
1,499,102 + CA264_06485 0.22 +0.9
1,499,102 + CA264_06485 0.22 -0.4
1,499,103 - CA264_06485 0.22 -0.4
1,499,156 + CA264_06485 0.31 +0.2
1,499,179 - CA264_06485 0.34 -0.7
1,499,197 + CA264_06485 0.37 +0.5
1,499,201 - CA264_06485 0.38 -0.2
1,499,201 - CA264_06485 0.38 -0.1
1,499,236 + CA264_06485 0.43 +0.8
1,499,257 - CA264_06485 0.47 -0.8
1,499,259 - CA264_06485 0.47 -1.1
1,499,264 + CA264_06485 0.48 -0.1
1,499,365 + CA264_06485 0.64 -0.5
1,499,404 + CA264_06485 0.70 -2.1
1,499,437 + CA264_06485 0.75 -0.0
1,499,466 + CA264_06485 0.80 +0.2
1,499,466 + CA264_06485 0.80 +0.0
1,499,495 - CA264_06485 0.85 -0.2
1,499,495 - CA264_06485 0.85 +0.5
1,499,540 + -1.2
1,499,552 + -0.1
1,499,553 - -0.3
1,499,557 - -0.5
1,499,557 - +0.5
1,499,623 - -0.5
1,499,623 - +0.2
1,499,630 + +1.0
1,499,630 + +0.4
1,499,674 + +0.8
1,499,697 + +1.0
1,499,697 + -0.1
1,499,742 - CA264_06490 0.10 -0.5
1,499,763 + CA264_06490 0.12 +0.2
1,499,788 + CA264_06490 0.15 +0.4
1,499,788 + CA264_06490 0.15 +0.0
1,499,789 - CA264_06490 0.15 -0.4
1,499,789 - CA264_06490 0.15 -0.6
1,499,793 - CA264_06490 0.15 -0.2
1,499,793 - CA264_06490 0.15 -0.2
1,499,795 + CA264_06490 0.15 -1.6
1,499,796 - CA264_06490 0.15 +0.0
1,499,811 + CA264_06490 0.17 +0.3
1,499,860 - CA264_06490 0.21 -0.3

Or see this region's nucleotide sequence