Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06215

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06210 and CA264_06215 are separated by 3 nucleotidesCA264_06215 and CA264_06220 are separated by 182 nucleotidesCA264_06220 and CA264_06225 are separated by 21 nucleotides CA264_06210: CA264_06210 - glutathione synthase, at 1,445,504 to 1,446,979 _06210 CA264_06215: CA264_06215 - peptidase-C39 like family protein, at 1,446,983 to 1,447,705 _06215 CA264_06220: CA264_06220 - hypothetical protein, at 1,447,888 to 1,448,574 _06220 CA264_06225: CA264_06225 - argininosuccinate lyase, at 1,448,596 to 1,449,933 _06225 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1446.167 kb on + strand, within CA264_06210at 1446.210 kb on + strand, within CA264_06210at 1446.210 kb on + strand, within CA264_06210at 1446.214 kb on + strand, within CA264_06210at 1446.214 kb on + strand, within CA264_06210at 1446.214 kb on + strand, within CA264_06210at 1446.214 kb on + strand, within CA264_06210at 1446.214 kb on + strand, within CA264_06210at 1446.243 kb on - strand, within CA264_06210at 1446.243 kb on - strand, within CA264_06210at 1446.244 kb on + strand, within CA264_06210at 1446.244 kb on + strand, within CA264_06210at 1446.244 kb on + strand, within CA264_06210at 1446.245 kb on - strand, within CA264_06210at 1446.245 kb on - strand, within CA264_06210at 1446.245 kb on - strand, within CA264_06210at 1446.289 kb on + strand, within CA264_06210at 1446.304 kb on - strand, within CA264_06210at 1446.383 kb on + strand, within CA264_06210at 1446.402 kb on + strand, within CA264_06210at 1446.402 kb on + strand, within CA264_06210at 1446.403 kb on - strand, within CA264_06210at 1446.403 kb on - strand, within CA264_06210at 1446.601 kb on + strand, within CA264_06210at 1446.616 kb on - strand, within CA264_06210at 1446.642 kb on + strand, within CA264_06210at 1446.729 kb on - strand, within CA264_06210at 1446.810 kb on + strand, within CA264_06210at 1446.897 kb on + strandat 1446.898 kb on - strandat 1446.968 kb on + strandat 1446.989 kb on + strandat 1447.095 kb on + strand, within CA264_06215at 1447.095 kb on + strand, within CA264_06215at 1447.095 kb on + strand, within CA264_06215at 1447.096 kb on - strand, within CA264_06215at 1447.096 kb on - strand, within CA264_06215at 1447.140 kb on - strand, within CA264_06215at 1447.225 kb on + strand, within CA264_06215at 1447.266 kb on + strand, within CA264_06215at 1447.266 kb on + strand, within CA264_06215at 1447.266 kb on + strand, within CA264_06215at 1447.267 kb on - strand, within CA264_06215at 1447.463 kb on - strand, within CA264_06215at 1447.500 kb on + strand, within CA264_06215at 1447.501 kb on - strand, within CA264_06215at 1447.507 kb on - strand, within CA264_06215at 1447.577 kb on + strand, within CA264_06215at 1447.595 kb on - strand, within CA264_06215at 1447.624 kb on + strand, within CA264_06215at 1447.624 kb on + strand, within CA264_06215at 1447.635 kb on + strandat 1447.689 kb on - strandat 1447.712 kb on + strandat 1447.713 kb on - strandat 1447.732 kb on + strandat 1447.732 kb on + strandat 1447.732 kb on + strandat 1447.860 kb on + strandat 1447.862 kb on + strandat 1447.908 kb on - strandat 1448.023 kb on + strand, within CA264_06220at 1448.024 kb on - strand, within CA264_06220at 1448.074 kb on + strand, within CA264_06220at 1448.202 kb on + strand, within CA264_06220at 1448.202 kb on + strand, within CA264_06220at 1448.286 kb on - strand, within CA264_06220at 1448.332 kb on + strand, within CA264_06220at 1448.547 kb on + strandat 1448.548 kb on - strandat 1448.582 kb on + strandat 1448.582 kb on + strandat 1448.583 kb on - strandat 1448.592 kb on + strandat 1448.592 kb on + strandat 1448.592 kb on + strandat 1448.597 kb on + strandat 1448.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,446,167 + CA264_06210 0.45 -0.7
1,446,210 + CA264_06210 0.48 -0.2
1,446,210 + CA264_06210 0.48 -1.3
1,446,214 + CA264_06210 0.48 +0.8
1,446,214 + CA264_06210 0.48 -0.5
1,446,214 + CA264_06210 0.48 -0.8
1,446,214 + CA264_06210 0.48 +0.0
1,446,214 + CA264_06210 0.48 -0.2
1,446,243 - CA264_06210 0.50 -0.5
1,446,243 - CA264_06210 0.50 -0.5
1,446,244 + CA264_06210 0.50 -0.4
1,446,244 + CA264_06210 0.50 -0.3
1,446,244 + CA264_06210 0.50 -0.2
1,446,245 - CA264_06210 0.50 +0.5
1,446,245 - CA264_06210 0.50 +0.5
1,446,245 - CA264_06210 0.50 -0.5
1,446,289 + CA264_06210 0.53 -1.2
1,446,304 - CA264_06210 0.54 -1.2
1,446,383 + CA264_06210 0.60 +0.0
1,446,402 + CA264_06210 0.61 +0.6
1,446,402 + CA264_06210 0.61 -0.2
1,446,403 - CA264_06210 0.61 -0.9
1,446,403 - CA264_06210 0.61 +0.4
1,446,601 + CA264_06210 0.74 -0.4
1,446,616 - CA264_06210 0.75 -0.9
1,446,642 + CA264_06210 0.77 +0.3
1,446,729 - CA264_06210 0.83 +0.6
1,446,810 + CA264_06210 0.88 +0.2
1,446,897 + -1.5
1,446,898 - -0.9
1,446,968 + -0.7
1,446,989 + -1.7
1,447,095 + CA264_06215 0.15 -0.8
1,447,095 + CA264_06215 0.15 -0.8
1,447,095 + CA264_06215 0.15 +0.1
1,447,096 - CA264_06215 0.16 -0.4
1,447,096 - CA264_06215 0.16 -0.2
1,447,140 - CA264_06215 0.22 -1.6
1,447,225 + CA264_06215 0.33 +0.5
1,447,266 + CA264_06215 0.39 -0.6
1,447,266 + CA264_06215 0.39 -0.6
1,447,266 + CA264_06215 0.39 -0.9
1,447,267 - CA264_06215 0.39 +0.5
1,447,463 - CA264_06215 0.66 -0.2
1,447,500 + CA264_06215 0.72 -0.4
1,447,501 - CA264_06215 0.72 +1.5
1,447,507 - CA264_06215 0.72 +0.8
1,447,577 + CA264_06215 0.82 -1.5
1,447,595 - CA264_06215 0.85 -0.4
1,447,624 + CA264_06215 0.89 -1.1
1,447,624 + CA264_06215 0.89 -0.4
1,447,635 + -2.9
1,447,689 - +0.0
1,447,712 + -0.1
1,447,713 - -1.0
1,447,732 + -0.2
1,447,732 + -0.5
1,447,732 + -1.3
1,447,860 + -0.1
1,447,862 + +0.1
1,447,908 - -0.1
1,448,023 + CA264_06220 0.20 -0.7
1,448,024 - CA264_06220 0.20 -0.5
1,448,074 + CA264_06220 0.27 -0.5
1,448,202 + CA264_06220 0.46 -1.6
1,448,202 + CA264_06220 0.46 -0.5
1,448,286 - CA264_06220 0.58 -0.2
1,448,332 + CA264_06220 0.65 -0.6
1,448,547 + +0.2
1,448,548 - -0.6
1,448,582 + -0.5
1,448,582 + -0.3
1,448,583 - -0.5
1,448,592 + -0.3
1,448,592 + -0.5
1,448,592 + -0.3
1,448,597 + +0.1
1,448,621 + +1.8

Or see this region's nucleotide sequence