Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05000

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04990 and CA264_04995 are separated by 150 nucleotidesCA264_04995 and CA264_05000 are separated by 107 nucleotidesCA264_05000 and CA264_05005 are separated by 15 nucleotides CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852 _04990 CA264_04995: CA264_04995 - hypothetical protein, at 1,160,003 to 1,160,593 _04995 CA264_05000: CA264_05000 - ribulose-phosphate 3-epimerase, at 1,160,701 to 1,161,354 _05000 CA264_05005: CA264_05005 - colicin receptor, at 1,161,370 to 1,163,796 _05005 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1159.730 kb on - strandat 1159.730 kb on - strandat 1159.793 kb on + strandat 1159.794 kb on - strandat 1159.796 kb on - strandat 1159.908 kb on + strandat 1159.911 kb on - strandat 1159.926 kb on + strandat 1159.989 kb on + strandat 1159.990 kb on - strandat 1160.031 kb on - strandat 1160.031 kb on - strandat 1160.216 kb on + strand, within CA264_04995at 1160.219 kb on - strand, within CA264_04995at 1160.350 kb on + strand, within CA264_04995at 1160.351 kb on - strand, within CA264_04995at 1160.390 kb on + strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.436 kb on + strand, within CA264_04995at 1160.437 kb on - strand, within CA264_04995at 1160.499 kb on + strand, within CA264_04995at 1160.565 kb on - strandat 1160.591 kb on + strandat 1160.591 kb on + strandat 1160.635 kb on + strandat 1160.635 kb on + strandat 1160.697 kb on - strandat 1160.697 kb on - strandat 1161.352 kb on + strandat 1161.384 kb on - strandat 1161.402 kb on - strandat 1161.414 kb on - strandat 1161.550 kb on - strandat 1161.598 kb on + strandat 1161.601 kb on - strandat 1161.601 kb on - strandat 1161.646 kb on - strand, within CA264_05005at 1161.646 kb on - strand, within CA264_05005at 1161.659 kb on + strand, within CA264_05005at 1161.660 kb on - strand, within CA264_05005at 1161.804 kb on - strand, within CA264_05005at 1161.804 kb on - strand, within CA264_05005at 1161.826 kb on - strand, within CA264_05005at 1161.834 kb on + strand, within CA264_05005at 1162.055 kb on - strand, within CA264_05005at 1162.184 kb on - strand, within CA264_05005at 1162.184 kb on - strand, within CA264_05005at 1162.218 kb on + strand, within CA264_05005at 1162.219 kb on - strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,159,730 - -0.2
1,159,730 - -0.3
1,159,793 + -0.3
1,159,794 - +0.5
1,159,796 - -2.2
1,159,908 + +0.1
1,159,911 - -0.5
1,159,926 + -0.7
1,159,989 + -0.5
1,159,990 - +0.2
1,160,031 - -0.2
1,160,031 - -1.0
1,160,216 + CA264_04995 0.36 -0.7
1,160,219 - CA264_04995 0.37 -0.5
1,160,350 + CA264_04995 0.59 -0.2
1,160,351 - CA264_04995 0.59 -1.0
1,160,390 + CA264_04995 0.65 -0.7
1,160,391 - CA264_04995 0.66 -0.8
1,160,391 - CA264_04995 0.66 +0.1
1,160,436 + CA264_04995 0.73 -0.8
1,160,437 - CA264_04995 0.73 -1.6
1,160,499 + CA264_04995 0.84 -0.6
1,160,565 - -1.5
1,160,591 + -0.4
1,160,591 + -0.5
1,160,635 + +0.8
1,160,635 + -0.9
1,160,697 - -1.7
1,160,697 - +0.9
1,161,352 + +0.2
1,161,384 - -0.5
1,161,402 - +2.1
1,161,414 - +2.1
1,161,550 - +2.1
1,161,598 + +2.4
1,161,601 - +2.4
1,161,601 - +2.0
1,161,646 - CA264_05005 0.11 +3.2
1,161,646 - CA264_05005 0.11 +2.1
1,161,659 + CA264_05005 0.12 +2.4
1,161,660 - CA264_05005 0.12 +2.4
1,161,804 - CA264_05005 0.18 +2.0
1,161,804 - CA264_05005 0.18 +1.9
1,161,826 - CA264_05005 0.19 +2.6
1,161,834 + CA264_05005 0.19 +1.4
1,162,055 - CA264_05005 0.28 +2.5
1,162,184 - CA264_05005 0.34 +1.7
1,162,184 - CA264_05005 0.34 +2.3
1,162,218 + CA264_05005 0.35 +2.1
1,162,219 - CA264_05005 0.35 +2.4
1,162,246 + CA264_05005 0.36 +1.1
1,162,246 + CA264_05005 0.36 +2.5
1,162,246 + CA264_05005 0.36 +2.2
1,162,247 - CA264_05005 0.36 +2.2
1,162,247 - CA264_05005 0.36 +1.3
1,162,247 - CA264_05005 0.36 +1.6

Or see this region's nucleotide sequence