Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03605

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03600 and CA264_03605 are separated by 287 nucleotidesCA264_03605 and CA264_03610 are separated by 69 nucleotidesCA264_03610 and CA264_03615 are separated by 133 nucleotides CA264_03600: CA264_03600 - ATP-dependent helicase HrpB, at 838,914 to 841,460 _03600 CA264_03605: CA264_03605 - DNA-binding protein, at 841,748 to 842,206 _03605 CA264_03610: CA264_03610 - hypothetical protein, at 842,276 to 842,503 _03610 CA264_03615: CA264_03615 - cold-shock protein, at 842,637 to 842,828 _03615 Position (kb) 841 842 843Strain fitness (log2 ratio) -1 0 1 2 3at 840.813 kb on + strand, within CA264_03600at 841.143 kb on + strand, within CA264_03600at 841.143 kb on + strand, within CA264_03600at 841.144 kb on - strand, within CA264_03600at 841.144 kb on - strand, within CA264_03600at 841.161 kb on + strand, within CA264_03600at 841.230 kb on - strandat 841.338 kb on - strandat 841.460 kb on + strandat 841.461 kb on - strandat 841.461 kb on - strandat 841.461 kb on - strandat 841.521 kb on - strandat 841.574 kb on + strandat 841.670 kb on + strandat 841.671 kb on - strandat 841.682 kb on + strandat 841.683 kb on - strandat 841.683 kb on - strandat 841.683 kb on - strandat 841.684 kb on + strandat 841.685 kb on - strandat 841.707 kb on + strandat 841.746 kb on - strandat 841.750 kb on - strandat 842.004 kb on - strand, within CA264_03605at 842.051 kb on - strand, within CA264_03605at 842.067 kb on + strand, within CA264_03605at 842.232 kb on - strandat 842.232 kb on - strandat 842.234 kb on + strandat 842.238 kb on - strandat 842.239 kb on + strandat 842.240 kb on - strandat 842.240 kb on - strandat 842.255 kb on + strandat 842.263 kb on + strandat 842.263 kb on + strandat 842.277 kb on + strandat 842.278 kb on - strandat 842.396 kb on - strand, within CA264_03610at 842.446 kb on + strand, within CA264_03610at 842.447 kb on - strand, within CA264_03610at 842.453 kb on + strand, within CA264_03610at 842.453 kb on + strand, within CA264_03610at 842.454 kb on - strand, within CA264_03610at 842.463 kb on + strand, within CA264_03610at 842.486 kb on + strandat 842.514 kb on + strandat 842.515 kb on - strandat 842.604 kb on + strandat 842.605 kb on - strandat 842.615 kb on + strandat 842.618 kb on - strandat 842.618 kb on - strandat 842.625 kb on - strandat 842.625 kb on - strandat 842.627 kb on + strandat 842.632 kb on + strandat 842.632 kb on + strandat 842.632 kb on + strandat 842.632 kb on + strandat 842.648 kb on + strandat 842.725 kb on - strand, within CA264_03615at 842.736 kb on + strand, within CA264_03615at 842.742 kb on + strand, within CA264_03615at 842.743 kb on - strand, within CA264_03615at 842.749 kb on + strand, within CA264_03615at 842.775 kb on - strand, within CA264_03615at 842.844 kb on - strandat 842.844 kb on - strandat 842.845 kb on + strandat 842.845 kb on + strandat 842.851 kb on + strandat 842.851 kb on + strandat 842.852 kb on - strandat 842.852 kb on - strandat 842.854 kb on + strandat 842.871 kb on - strandat 842.872 kb on + strandat 842.931 kb on - strandat 842.974 kb on + strandat 843.139 kb on - strandat 843.157 kb on + strandat 843.158 kb on - strandat 843.160 kb on - strandat 843.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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840,813 + CA264_03600 0.75 -1.1
841,143 + CA264_03600 0.88 -0.0
841,143 + CA264_03600 0.88 -0.6
841,144 - CA264_03600 0.88 -0.9
841,144 - CA264_03600 0.88 -1.1
841,161 + CA264_03600 0.88 +2.0
841,230 - -0.0
841,338 - +3.1
841,460 + -0.4
841,461 - -0.2
841,461 - +0.6
841,461 - -0.3
841,521 - +0.7
841,574 + -0.7
841,670 + -0.2
841,671 - -0.5
841,682 + +0.4
841,683 - +1.6
841,683 - -0.3
841,683 - -0.2
841,684 + -0.3
841,685 - -1.0
841,707 + +0.7
841,746 - -1.5
841,750 - +0.6
842,004 - CA264_03605 0.56 -0.2
842,051 - CA264_03605 0.66 -0.7
842,067 + CA264_03605 0.69 -1.0
842,232 - -0.0
842,232 - -0.7
842,234 + +0.4
842,238 - -0.2
842,239 + -0.1
842,240 - -0.9
842,240 - -0.5
842,255 + -0.3
842,263 + -0.6
842,263 + -0.5
842,277 + +0.8
842,278 - +0.8
842,396 - CA264_03610 0.53 -0.3
842,446 + CA264_03610 0.75 +0.1
842,447 - CA264_03610 0.75 -0.0
842,453 + CA264_03610 0.78 +2.8
842,453 + CA264_03610 0.78 -0.2
842,454 - CA264_03610 0.78 -0.1
842,463 + CA264_03610 0.82 -0.1
842,486 + +1.7
842,514 + -0.1
842,515 - -0.3
842,604 + +0.2
842,605 - +0.2
842,615 + +0.3
842,618 - -0.6
842,618 - -0.2
842,625 - -1.4
842,625 - -1.3
842,627 + +0.4
842,632 + -0.2
842,632 + +0.0
842,632 + +0.4
842,632 + -0.3
842,648 + -0.4
842,725 - CA264_03615 0.46 +1.1
842,736 + CA264_03615 0.52 +0.3
842,742 + CA264_03615 0.55 -0.1
842,743 - CA264_03615 0.55 -1.3
842,749 + CA264_03615 0.58 -1.1
842,775 - CA264_03615 0.72 +0.0
842,844 - -1.2
842,844 - -0.1
842,845 + -0.4
842,845 + +0.5
842,851 + -0.3
842,851 + -0.1
842,852 - -0.5
842,852 - -0.1
842,854 + +0.5
842,871 - +0.0
842,872 + -0.7
842,931 - -0.5
842,974 + -0.0
843,139 - +0.2
843,157 + +0.1
843,158 - -1.0
843,160 - -0.5
843,204 + +0.4

Or see this region's nucleotide sequence