Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02830

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02820 and CA264_02825 are separated by 72 nucleotidesCA264_02825 and CA264_02830 are separated by 64 nucleotidesCA264_02830 and CA264_02835 are separated by 194 nucleotides CA264_02820: CA264_02820 - GDP-mannose pyrophosphatase, at 648,051 to 648,572 _02820 CA264_02825: CA264_02825 - hypothetical protein, at 648,645 to 649,355 _02825 CA264_02830: CA264_02830 - glycoside hydrolase family 3, at 649,420 to 651,267 _02830 CA264_02835: CA264_02835 - rhomboid family intramembrane serine protease, at 651,462 to 652,262 _02835 Position (kb) 649 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2at 648.571 kb on - strandat 648.571 kb on - strandat 648.573 kb on + strandat 648.595 kb on + strandat 648.595 kb on + strandat 648.598 kb on + strandat 648.604 kb on + strandat 648.610 kb on - strandat 648.633 kb on - strandat 648.647 kb on - strandat 648.647 kb on - strandat 648.729 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.801 kb on + strand, within CA264_02825at 648.802 kb on - strand, within CA264_02825at 648.802 kb on - strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.806 kb on - strand, within CA264_02825at 648.806 kb on - strand, within CA264_02825at 648.921 kb on + strand, within CA264_02825at 649.158 kb on - strand, within CA264_02825at 649.158 kb on - strand, within CA264_02825at 649.314 kb on + strandat 649.314 kb on + strandat 649.315 kb on - strandat 649.315 kb on - strandat 649.351 kb on - strandat 649.351 kb on - strandat 649.391 kb on - strandat 649.391 kb on - strandat 649.394 kb on + strandat 649.450 kb on - strandat 649.453 kb on + strandat 649.453 kb on + strandat 649.453 kb on + strandat 649.453 kb on + strandat 649.453 kb on + strandat 649.454 kb on - strandat 649.454 kb on - strandat 649.622 kb on + strand, within CA264_02830at 649.716 kb on + strand, within CA264_02830at 649.760 kb on + strand, within CA264_02830at 649.761 kb on - strand, within CA264_02830at 649.853 kb on - strand, within CA264_02830at 649.873 kb on - strand, within CA264_02830at 650.051 kb on + strand, within CA264_02830at 650.051 kb on + strand, within CA264_02830at 650.051 kb on + strand, within CA264_02830at 650.052 kb on - strand, within CA264_02830at 650.052 kb on - strand, within CA264_02830at 650.052 kb on - strand, within CA264_02830at 650.052 kb on - strand, within CA264_02830at 650.137 kb on + strand, within CA264_02830at 650.179 kb on - strand, within CA264_02830at 650.243 kb on + strand, within CA264_02830at 650.243 kb on + strand, within CA264_02830at 650.284 kb on - strand, within CA264_02830at 650.368 kb on + strand, within CA264_02830at 650.369 kb on - strand, within CA264_02830at 650.369 kb on - strand, within CA264_02830at 650.550 kb on + strand, within CA264_02830at 650.576 kb on + strand, within CA264_02830at 650.596 kb on + strand, within CA264_02830at 650.735 kb on + strand, within CA264_02830at 650.996 kb on - strand, within CA264_02830at 651.000 kb on + strand, within CA264_02830at 651.004 kb on + strand, within CA264_02830at 651.004 kb on + strand, within CA264_02830at 651.004 kb on + strand, within CA264_02830at 651.005 kb on - strand, within CA264_02830at 651.036 kb on + strand, within CA264_02830at 651.037 kb on - strand, within CA264_02830at 651.235 kb on - strandat 651.235 kb on - strandat 651.276 kb on + strandat 651.278 kb on + strandat 651.279 kb on - strandat 651.293 kb on + strandat 651.294 kb on - strandat 651.325 kb on + strandat 651.329 kb on - strandat 651.329 kb on - strandat 651.377 kb on + strandat 651.377 kb on + strandat 651.378 kb on - strandat 651.378 kb on - strandat 651.383 kb on - strandat 651.397 kb on - strandat 651.438 kb on - strandat 651.455 kb on + strandat 651.455 kb on + strandat 651.456 kb on - strandat 651.462 kb on - strandat 651.462 kb on - strandat 651.492 kb on + strandat 651.493 kb on - strandat 651.493 kb on - strandat 651.780 kb on + strand, within CA264_02835at 651.809 kb on + strand, within CA264_02835at 652.102 kb on + strand, within CA264_02835at 652.103 kb on - strand, within CA264_02835at 652.137 kb on + strand, within CA264_02835at 652.137 kb on + strand, within CA264_02835at 652.137 kb on + strand, within CA264_02835at 652.140 kb on - strand, within CA264_02835at 652.146 kb on + strand, within CA264_02835at 652.146 kb on + strand, within CA264_02835at 652.147 kb on - strand, within CA264_02835at 652.179 kb on + strand, within CA264_02835at 652.192 kb on - strandat 652.192 kb on - strandat 652.192 kb on - strandat 652.239 kb on - strandat 652.239 kb on - strandat 652.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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648,571 - +1.1
648,571 - +0.2
648,573 + -0.9
648,595 + -1.1
648,595 + -0.6
648,598 + -0.2
648,604 + -1.8
648,610 - +0.4
648,633 - +0.5
648,647 - +0.7
648,647 - -0.0
648,729 - CA264_02825 0.12 -0.2
648,791 - CA264_02825 0.21 -1.2
648,791 - CA264_02825 0.21 -1.3
648,791 - CA264_02825 0.21 -1.4
648,801 + CA264_02825 0.22 -0.4
648,802 - CA264_02825 0.22 -0.7
648,802 - CA264_02825 0.22 -1.2
648,805 + CA264_02825 0.23 +1.3
648,805 + CA264_02825 0.23 +0.2
648,805 + CA264_02825 0.23 -0.3
648,806 - CA264_02825 0.23 -0.1
648,806 - CA264_02825 0.23 +0.6
648,921 + CA264_02825 0.39 -0.9
649,158 - CA264_02825 0.72 -1.6
649,158 - CA264_02825 0.72 -0.4
649,314 + -0.0
649,314 + -0.6
649,315 - -1.0
649,315 - -0.5
649,351 - -0.1
649,351 - -0.2
649,391 - +2.6
649,391 - -0.8
649,394 + -0.5
649,450 - +0.1
649,453 + +0.0
649,453 + -1.1
649,453 + -0.3
649,453 + -0.2
649,453 + -0.3
649,454 - -0.4
649,454 - -0.3
649,622 + CA264_02830 0.11 +0.1
649,716 + CA264_02830 0.16 -0.2
649,760 + CA264_02830 0.18 -0.1
649,761 - CA264_02830 0.18 -1.1
649,853 - CA264_02830 0.23 -0.4
649,873 - CA264_02830 0.25 +1.0
650,051 + CA264_02830 0.34 +2.3
650,051 + CA264_02830 0.34 -0.1
650,051 + CA264_02830 0.34 -0.7
650,052 - CA264_02830 0.34 +0.0
650,052 - CA264_02830 0.34 +0.6
650,052 - CA264_02830 0.34 +1.4
650,052 - CA264_02830 0.34 +1.6
650,137 + CA264_02830 0.39 -0.6
650,179 - CA264_02830 0.41 +1.2
650,243 + CA264_02830 0.45 -0.7
650,243 + CA264_02830 0.45 -0.3
650,284 - CA264_02830 0.47 -0.1
650,368 + CA264_02830 0.51 -0.2
650,369 - CA264_02830 0.51 -1.0
650,369 - CA264_02830 0.51 -1.4
650,550 + CA264_02830 0.61 -2.4
650,576 + CA264_02830 0.63 +0.8
650,596 + CA264_02830 0.64 +1.6
650,735 + CA264_02830 0.71 -0.7
650,996 - CA264_02830 0.85 +1.5
651,000 + CA264_02830 0.85 -0.7
651,004 + CA264_02830 0.86 -0.2
651,004 + CA264_02830 0.86 -0.9
651,004 + CA264_02830 0.86 -0.2
651,005 - CA264_02830 0.86 +0.5
651,036 + CA264_02830 0.87 +0.4
651,037 - CA264_02830 0.88 -0.3
651,235 - +1.8
651,235 - -0.1
651,276 + -0.3
651,278 + -0.7
651,279 - +0.6
651,293 + -0.8
651,294 - -0.8
651,325 + -0.0
651,329 - -1.1
651,329 - -0.1
651,377 + -0.2
651,377 + -0.9
651,378 - -0.6
651,378 - -1.5
651,383 - -1.4
651,397 - -2.0
651,438 - -2.5
651,455 + -0.1
651,455 + -1.3
651,456 - +0.4
651,462 - -1.0
651,462 - -0.3
651,492 + -0.9
651,493 - -0.6
651,493 - -0.6
651,780 + CA264_02835 0.40 -0.5
651,809 + CA264_02835 0.43 -0.7
652,102 + CA264_02835 0.80 -0.4
652,103 - CA264_02835 0.80 -0.6
652,137 + CA264_02835 0.84 -1.1
652,137 + CA264_02835 0.84 -0.0
652,137 + CA264_02835 0.84 -0.6
652,140 - CA264_02835 0.85 -1.5
652,146 + CA264_02835 0.85 -1.2
652,146 + CA264_02835 0.85 +0.2
652,147 - CA264_02835 0.86 -1.0
652,179 + CA264_02835 0.90 +0.6
652,192 - -1.7
652,192 - -0.6
652,192 - -1.3
652,239 - -1.2
652,239 - +0.4
652,239 - +0.1

Or see this region's nucleotide sequence