Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02565

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02560 and CA264_02565 are separated by 102 nucleotidesCA264_02565 and CA264_02570 are separated by 11 nucleotidesCA264_02570 and CA264_02575 are separated by 236 nucleotidesCA264_02575 and CA264_02580 are separated by 86 nucleotides CA264_02560: CA264_02560 - DUF4153 domain-containing protein, at 598,093 to 599,337 _02560 CA264_02565: CA264_02565 - hypothetical protein, at 599,440 to 599,706 _02565 CA264_02570: CA264_02570 - hypothetical protein, at 599,718 to 600,008 _02570 CA264_02575: CA264_02575 - potassium transporter KefB, at 600,245 to 600,583 _02575 CA264_02580: CA264_02580 - transcriptional regulator, at 600,670 to 600,978 _02580 Position (kb) 599 600Strain fitness (log2 ratio) -1 0 1at 598.443 kb on + strand, within CA264_02560at 598.500 kb on - strand, within CA264_02560at 598.517 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.582 kb on - strand, within CA264_02560at 598.601 kb on - strand, within CA264_02560at 598.673 kb on + strand, within CA264_02560at 598.674 kb on - strand, within CA264_02560at 598.682 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.717 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.762 kb on - strand, within CA264_02560at 598.803 kb on - strand, within CA264_02560at 598.820 kb on + strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.905 kb on + strand, within CA264_02560at 598.906 kb on - strand, within CA264_02560at 599.056 kb on - strand, within CA264_02560at 599.095 kb on + strand, within CA264_02560at 599.096 kb on - strand, within CA264_02560at 599.119 kb on + strand, within CA264_02560at 599.183 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.320 kb on + strandat 599.478 kb on + strand, within CA264_02565at 599.494 kb on + strand, within CA264_02565at 599.573 kb on + strand, within CA264_02565at 599.681 kb on + strandat 599.681 kb on + strandat 599.681 kb on + strandat 599.746 kb on - strandat 599.788 kb on - strand, within CA264_02570at 599.890 kb on - strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.932 kb on - strand, within CA264_02570at 599.985 kb on - strandat 599.985 kb on - strandat 600.008 kb on + strandat 600.078 kb on - strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.136 kb on + strandat 600.171 kb on - strandat 600.191 kb on + strandat 600.192 kb on - strandat 600.221 kb on - strandat 600.303 kb on + strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.305 kb on + strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.324 kb on + strand, within CA264_02575at 600.428 kb on - strand, within CA264_02575at 600.589 kb on + strandat 600.599 kb on - strandat 600.603 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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598,443 + CA264_02560 0.28 -0.9
598,500 - CA264_02560 0.33 -0.2
598,517 + CA264_02560 0.34 -0.5
598,535 + CA264_02560 0.36 -0.6
598,535 + CA264_02560 0.36 -0.8
598,582 - CA264_02560 0.39 +0.3
598,601 - CA264_02560 0.41 -1.4
598,673 + CA264_02560 0.47 -0.1
598,674 - CA264_02560 0.47 +0.2
598,682 + CA264_02560 0.47 +1.0
598,684 + CA264_02560 0.47 +0.6
598,684 + CA264_02560 0.47 -0.1
598,717 + CA264_02560 0.50 +1.0
598,761 + CA264_02560 0.54 -0.6
598,761 + CA264_02560 0.54 -1.0
598,762 - CA264_02560 0.54 -0.3
598,803 - CA264_02560 0.57 -0.5
598,820 + CA264_02560 0.58 -0.4
598,845 - CA264_02560 0.60 -0.2
598,845 - CA264_02560 0.60 +1.0
598,905 + CA264_02560 0.65 -0.7
598,906 - CA264_02560 0.65 +1.1
599,056 - CA264_02560 0.77 +0.0
599,095 + CA264_02560 0.80 +0.1
599,096 - CA264_02560 0.81 -0.8
599,119 + CA264_02560 0.82 +0.4
599,183 + CA264_02560 0.88 -0.2
599,188 + CA264_02560 0.88 -0.4
599,188 + CA264_02560 0.88 +0.1
599,320 + -0.4
599,478 + CA264_02565 0.14 -0.1
599,494 + CA264_02565 0.20 -0.1
599,573 + CA264_02565 0.50 +0.9
599,681 + -0.3
599,681 + -0.5
599,681 + +0.9
599,746 - -0.1
599,788 - CA264_02570 0.24 -0.6
599,890 - CA264_02570 0.59 -0.1
599,931 + CA264_02570 0.73 +0.6
599,931 + CA264_02570 0.73 +0.5
599,932 - CA264_02570 0.74 -0.5
599,985 - +0.9
599,985 - +0.5
600,008 + -0.0
600,078 - -0.6
600,099 + -0.8
600,099 + -1.1
600,099 + +0.4
600,136 + +0.0
600,171 - +0.0
600,191 + +0.3
600,192 - -1.2
600,221 - -0.5
600,303 + CA264_02575 0.17 -0.2
600,304 - CA264_02575 0.17 -0.9
600,304 - CA264_02575 0.17 +1.6
600,305 + CA264_02575 0.18 -0.0
600,323 - CA264_02575 0.23 -1.7
600,323 - CA264_02575 0.23 +0.8
600,324 + CA264_02575 0.23 -0.3
600,428 - CA264_02575 0.54 -0.2
600,589 + -0.5
600,599 - -1.0
600,603 + +0.4

Or see this region's nucleotide sequence