Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02380

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02375 and CA264_02380 overlap by 20 nucleotidesCA264_02380 and CA264_02385 are separated by 212 nucleotidesCA264_02385 and CA264_02390 are separated by 72 nucleotides CA264_02375: CA264_02375 - homoserine O-acetyltransferase, at 549,210 to 550,271 _02375 CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511 _02380 CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410 _02385 CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625 _02390 Position (kb) 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 549.291 kb on + strandat 549.291 kb on + strandat 549.291 kb on + strandat 549.300 kb on + strandat 549.301 kb on - strandat 549.310 kb on + strandat 549.510 kb on + strand, within CA264_02375at 549.511 kb on - strand, within CA264_02375at 549.599 kb on + strand, within CA264_02375at 549.599 kb on + strand, within CA264_02375at 549.600 kb on - strand, within CA264_02375at 549.600 kb on - strand, within CA264_02375at 549.848 kb on + strand, within CA264_02375at 549.848 kb on + strand, within CA264_02375at 549.849 kb on - strand, within CA264_02375at 549.849 kb on - strand, within CA264_02375at 549.853 kb on - strand, within CA264_02375at 549.958 kb on - strand, within CA264_02375at 549.958 kb on - strand, within CA264_02375at 549.963 kb on + strand, within CA264_02375at 549.964 kb on - strand, within CA264_02375at 549.978 kb on - strand, within CA264_02375at 549.978 kb on - strand, within CA264_02375at 550.042 kb on + strand, within CA264_02375at 550.042 kb on + strand, within CA264_02375at 550.219 kb on - strandat 550.252 kb on - strandat 550.281 kb on + strandat 550.325 kb on + strandat 550.411 kb on + strand, within CA264_02380at 550.445 kb on + strand, within CA264_02380at 550.446 kb on - strand, within CA264_02380at 550.604 kb on + strand, within CA264_02380at 550.609 kb on + strand, within CA264_02380at 550.610 kb on - strand, within CA264_02380at 550.661 kb on - strand, within CA264_02380at 550.663 kb on + strand, within CA264_02380at 550.718 kb on - strand, within CA264_02380at 550.879 kb on - strand, within CA264_02380at 550.909 kb on - strand, within CA264_02380at 550.909 kb on - strand, within CA264_02380at 550.910 kb on + strand, within CA264_02380at 550.910 kb on + strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 551.053 kb on + strand, within CA264_02380at 551.098 kb on + strand, within CA264_02380at 551.191 kb on + strand, within CA264_02380at 551.197 kb on + strand, within CA264_02380at 551.197 kb on + strand, within CA264_02380at 551.198 kb on - strand, within CA264_02380at 551.198 kb on - strand, within CA264_02380at 551.218 kb on + strand, within CA264_02380at 551.276 kb on + strand, within CA264_02380at 551.279 kb on - strand, within CA264_02380at 551.279 kb on - strand, within CA264_02380at 551.346 kb on - strand, within CA264_02380at 551.457 kb on + strandat 551.458 kb on - strandat 551.475 kb on - strandat 551.537 kb on - strandat 551.564 kb on - strandat 551.568 kb on - strandat 551.574 kb on - strandat 551.672 kb on - strandat 551.695 kb on + strandat 551.695 kb on + strandat 551.696 kb on - strandat 551.771 kb on - strandat 551.792 kb on + strandat 551.793 kb on - strand, within CA264_02385at 551.793 kb on - strand, within CA264_02385at 551.829 kb on - strand, within CA264_02385at 551.836 kb on - strand, within CA264_02385at 551.837 kb on + strand, within CA264_02385at 551.837 kb on + strand, within CA264_02385at 551.841 kb on + strand, within CA264_02385at 551.841 kb on + strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.847 kb on + strand, within CA264_02385at 551.953 kb on - strand, within CA264_02385at 551.954 kb on + strand, within CA264_02385at 552.085 kb on + strand, within CA264_02385at 552.086 kb on - strand, within CA264_02385at 552.086 kb on - strand, within CA264_02385at 552.090 kb on + strand, within CA264_02385at 552.090 kb on + strand, within CA264_02385at 552.091 kb on - strand, within CA264_02385at 552.152 kb on - strand, within CA264_02385at 552.152 kb on - strand, within CA264_02385at 552.294 kb on + strand, within CA264_02385at 552.414 kb on - strandat 552.414 kb on - strandat 552.468 kb on + strandat 552.470 kb on + strandat 552.490 kb on + strandat 552.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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549,291 + +0.8
549,291 + +0.3
549,291 + +0.3
549,300 + -0.9
549,301 - -0.1
549,310 + +0.7
549,510 + CA264_02375 0.28 +0.4
549,511 - CA264_02375 0.28 -0.3
549,599 + CA264_02375 0.37 +2.6
549,599 + CA264_02375 0.37 +2.0
549,600 - CA264_02375 0.37 +0.1
549,600 - CA264_02375 0.37 +0.2
549,848 + CA264_02375 0.60 -0.3
549,848 + CA264_02375 0.60 -1.4
549,849 - CA264_02375 0.60 +0.4
549,849 - CA264_02375 0.60 +0.9
549,853 - CA264_02375 0.61 +0.2
549,958 - CA264_02375 0.70 +0.1
549,958 - CA264_02375 0.70 -0.1
549,963 + CA264_02375 0.71 -0.2
549,964 - CA264_02375 0.71 -0.1
549,978 - CA264_02375 0.72 +0.3
549,978 - CA264_02375 0.72 +0.3
550,042 + CA264_02375 0.78 +0.4
550,042 + CA264_02375 0.78 +0.5
550,219 - -0.3
550,252 - +0.3
550,281 + -0.6
550,325 + +0.4
550,411 + CA264_02380 0.13 -0.5
550,445 + CA264_02380 0.15 -1.3
550,446 - CA264_02380 0.15 -0.6
550,604 + CA264_02380 0.28 +0.1
550,609 + CA264_02380 0.28 -0.2
550,610 - CA264_02380 0.28 +0.4
550,661 - CA264_02380 0.32 -0.1
550,663 + CA264_02380 0.33 -0.5
550,718 - CA264_02380 0.37 -1.1
550,879 - CA264_02380 0.50 -1.5
550,909 - CA264_02380 0.52 +0.6
550,909 - CA264_02380 0.52 +0.1
550,910 + CA264_02380 0.52 +0.2
550,910 + CA264_02380 0.52 +0.9
550,911 - CA264_02380 0.52 +0.3
550,911 - CA264_02380 0.52 +0.4
550,911 - CA264_02380 0.52 +0.3
551,053 + CA264_02380 0.64 -0.7
551,098 + CA264_02380 0.67 -0.9
551,191 + CA264_02380 0.75 -0.1
551,197 + CA264_02380 0.75 -0.1
551,197 + CA264_02380 0.75 -1.5
551,198 - CA264_02380 0.75 -0.7
551,198 - CA264_02380 0.75 +1.3
551,218 + CA264_02380 0.77 -0.3
551,276 + CA264_02380 0.81 -0.7
551,279 - CA264_02380 0.82 -0.4
551,279 - CA264_02380 0.82 +0.3
551,346 - CA264_02380 0.87 +0.6
551,457 + -0.0
551,458 - -3.4
551,475 - -0.3
551,537 - -0.3
551,564 - -0.4
551,568 - -0.9
551,574 - -1.3
551,672 - +0.2
551,695 + -0.7
551,695 + +1.9
551,696 - -0.4
551,771 - -0.9
551,792 + -0.5
551,793 - CA264_02385 0.10 +0.2
551,793 - CA264_02385 0.10 -0.7
551,829 - CA264_02385 0.15 -0.5
551,836 - CA264_02385 0.16 -0.0
551,837 + CA264_02385 0.16 +1.3
551,837 + CA264_02385 0.16 -0.6
551,841 + CA264_02385 0.17 -0.5
551,841 + CA264_02385 0.17 +1.4
551,842 - CA264_02385 0.17 +0.9
551,842 - CA264_02385 0.17 -0.2
551,842 - CA264_02385 0.17 +0.0
551,847 + CA264_02385 0.18 -1.3
551,953 - CA264_02385 0.33 +0.5
551,954 + CA264_02385 0.33 +2.6
552,085 + CA264_02385 0.53 -0.6
552,086 - CA264_02385 0.53 +0.6
552,086 - CA264_02385 0.53 -0.7
552,090 + CA264_02385 0.53 -0.4
552,090 + CA264_02385 0.53 -0.9
552,091 - CA264_02385 0.53 +0.2
552,152 - CA264_02385 0.62 +0.1
552,152 - CA264_02385 0.62 -0.7
552,294 + CA264_02385 0.83 -0.4
552,414 - -0.2
552,414 - +1.3
552,468 + +0.1
552,470 + +0.6
552,490 + +0.1
552,490 + -0.2

Or see this region's nucleotide sequence