Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00400

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00390 and CA264_00395 overlap by 4 nucleotidesCA264_00395 and CA264_00400 are separated by 276 nucleotidesCA264_00400 and CA264_00405 are separated by 29 nucleotidesCA264_00405 and CA264_00410 are separated by 158 nucleotides CA264_00390: CA264_00390 - N-acetyltransferase, at 86,654 to 87,136 _00390 CA264_00395: CA264_00395 - SAM-dependent methyltransferase, at 87,133 to 87,759 _00395 CA264_00400: CA264_00400 - alkyl hydroperoxide reductase, at 88,036 to 88,674 _00400 CA264_00405: CA264_00405 - transcriptional repressor, at 88,704 to 89,168 _00405 CA264_00410: CA264_00410 - enoyl-CoA hydratase, at 89,327 to 90,100 _00410 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1at 87.040 kb on - strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.132 kb on + strandat 87.132 kb on + strandat 87.133 kb on - strandat 87.139 kb on - strandat 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.436 kb on + strand, within CA264_00395at 87.437 kb on - strand, within CA264_00395at 87.453 kb on + strand, within CA264_00395at 87.489 kb on + strand, within CA264_00395at 87.490 kb on - strand, within CA264_00395at 87.534 kb on - strand, within CA264_00395at 87.535 kb on + strand, within CA264_00395at 87.536 kb on - strand, within CA264_00395at 87.565 kb on + strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395at 87.623 kb on - strand, within CA264_00395at 87.623 kb on - strand, within CA264_00395at 87.635 kb on + strand, within CA264_00395at 87.680 kb on + strand, within CA264_00395at 87.680 kb on + strand, within CA264_00395at 87.681 kb on - strand, within CA264_00395at 87.694 kb on + strand, within CA264_00395at 87.781 kb on + strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.937 kb on - strandat 87.961 kb on - strandat 88.018 kb on + strandat 88.062 kb on - strandat 88.065 kb on + strandat 88.069 kb on + strandat 88.093 kb on - strandat 88.226 kb on - strand, within CA264_00400at 88.280 kb on - strand, within CA264_00400at 88.348 kb on - strand, within CA264_00400at 88.376 kb on + strand, within CA264_00400at 88.551 kb on - strand, within CA264_00400at 88.663 kb on + strandat 88.663 kb on + strandat 88.663 kb on + strandat 88.722 kb on - strandat 88.728 kb on + strandat 88.729 kb on - strandat 89.036 kb on - strand, within CA264_00405at 89.114 kb on + strand, within CA264_00405at 89.142 kb on + strandat 89.198 kb on - strandat 89.224 kb on + strandat 89.229 kb on + strandat 89.230 kb on - strandat 89.263 kb on + strandat 89.263 kb on + strandat 89.264 kb on - strandat 89.265 kb on + strandat 89.288 kb on + strandat 89.289 kb on - strandat 89.309 kb on + strandat 89.310 kb on - strandat 89.321 kb on - strandat 89.410 kb on - strand, within CA264_00410at 89.547 kb on + strand, within CA264_00410at 89.547 kb on + strand, within CA264_00410at 89.609 kb on - strand, within CA264_00410at 89.609 kb on - strand, within CA264_00410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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87,040 - CA264_00390 0.80 +0.4
87,043 + CA264_00390 0.81 -0.6
87,043 + CA264_00390 0.81 -0.3
87,043 + CA264_00390 0.81 -0.6
87,043 + CA264_00390 0.81 -1.4
87,043 + CA264_00390 0.81 -1.3
87,043 + CA264_00390 0.81 -0.2
87,043 + CA264_00390 0.81 -0.1
87,043 + CA264_00390 0.81 -0.0
87,043 + CA264_00390 0.81 -1.1
87,043 + CA264_00390 0.81 -1.2
87,043 + CA264_00390 0.81 -1.2
87,044 - CA264_00390 0.81 -1.3
87,044 - CA264_00390 0.81 -0.1
87,044 - CA264_00390 0.81 -0.2
87,044 - CA264_00390 0.81 -0.3
87,132 + -0.4
87,132 + +0.5
87,133 - -0.5
87,139 - -0.3
87,326 + CA264_00395 0.31 +0.4
87,326 + CA264_00395 0.31 -1.4
87,326 + CA264_00395 0.31 -2.3
87,326 + CA264_00395 0.31 -0.8
87,436 + CA264_00395 0.48 -1.6
87,437 - CA264_00395 0.48 +0.0
87,453 + CA264_00395 0.51 -0.3
87,489 + CA264_00395 0.57 -1.2
87,490 - CA264_00395 0.57 -0.3
87,534 - CA264_00395 0.64 -0.8
87,535 + CA264_00395 0.64 -0.8
87,536 - CA264_00395 0.64 -0.4
87,565 + CA264_00395 0.69 -1.2
87,566 - CA264_00395 0.69 -0.1
87,566 - CA264_00395 0.69 +0.2
87,623 - CA264_00395 0.78 -0.3
87,623 - CA264_00395 0.78 +0.4
87,635 + CA264_00395 0.80 -1.1
87,680 + CA264_00395 0.87 -0.2
87,680 + CA264_00395 0.87 -1.7
87,681 - CA264_00395 0.87 -0.0
87,694 + CA264_00395 0.89 -0.7
87,781 + -0.3
87,782 - -0.2
87,782 - +0.8
87,782 - +0.2
87,826 - +0.3
87,826 - +0.4
87,826 - -0.1
87,937 - +1.5
87,961 - -0.6
88,018 + +0.6
88,062 - -1.3
88,065 + +0.0
88,069 + -0.6
88,093 - -0.1
88,226 - CA264_00400 0.30 +0.1
88,280 - CA264_00400 0.38 +1.3
88,348 - CA264_00400 0.49 -0.7
88,376 + CA264_00400 0.53 -0.1
88,551 - CA264_00400 0.81 +1.1
88,663 + -1.0
88,663 + -0.6
88,663 + +0.6
88,722 - -0.7
88,728 + -0.9
88,729 - -1.4
89,036 - CA264_00405 0.71 -0.7
89,114 + CA264_00405 0.88 +0.8
89,142 + -1.8
89,198 - -0.6
89,224 + -0.3
89,229 + -1.3
89,230 - -0.2
89,263 + -0.5
89,263 + -1.6
89,264 - +0.2
89,265 + -2.2
89,288 + -0.2
89,289 - -0.8
89,309 + -0.6
89,310 - +0.1
89,321 - -1.7
89,410 - CA264_00410 0.11 -0.9
89,547 + CA264_00410 0.28 -0.5
89,547 + CA264_00410 0.28 -0.1
89,609 - CA264_00410 0.36 -1.4
89,609 - CA264_00410 0.36 +0.3

Or see this region's nucleotide sequence