Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05455

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05445 and ABIE41_RS05450 overlap by 4 nucleotidesABIE41_RS05450 and ABIE41_RS05455 are separated by 4 nucleotidesABIE41_RS05455 and ABIE41_RS05460 are separated by 246 nucleotidesABIE41_RS05460 and ABIE41_RS05465 are separated by 6 nucleotides ABIE41_RS05445: ABIE41_RS05445 - hypothetical protein, at 1,127,077 to 1,127,532 _RS05445 ABIE41_RS05450: ABIE41_RS05450 - hypothetical protein, at 1,127,529 to 1,128,008 _RS05450 ABIE41_RS05455: ABIE41_RS05455 - rod-binding protein, at 1,128,013 to 1,128,645 _RS05455 ABIE41_RS05460: ABIE41_RS05460 - hypothetical protein, at 1,128,892 to 1,129,290 _RS05460 ABIE41_RS05465: ABIE41_RS05465 - flagellar biosynthesis protein FliR, at 1,129,297 to 1,130,049 _RS05465 Position (kb) 1128 1129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.240 kb on + strand, within ABIE41_RS05445at 1127.240 kb on + strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.399 kb on + strand, within ABIE41_RS05445at 1127.399 kb on + strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.365 kb on - strandat 1129.365 kb on - strandat 1129.413 kb on - strand, within ABIE41_RS05465at 1129.413 kb on - strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.592 kb on + strand, within ABIE41_RS05465at 1129.592 kb on + strand, within ABIE41_RS05465at 1129.593 kb on - strand, within ABIE41_RS05465

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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1,127,105 + +2.0
1,127,105 + -0.7
1,127,105 + -0.1
1,127,105 + +1.1
1,127,105 + -0.1
1,127,106 - -2.6
1,127,106 - -0.1
1,127,106 - +0.4
1,127,106 - -0.3
1,127,106 - -2.8
1,127,106 - -0.3
1,127,106 - -1.3
1,127,106 - -0.4
1,127,240 + ABIE41_RS05445 0.36 +0.3
1,127,240 + ABIE41_RS05445 0.36 +0.4
1,127,241 - ABIE41_RS05445 0.36 -0.1
1,127,241 - ABIE41_RS05445 0.36 -0.4
1,127,241 - ABIE41_RS05445 0.36 -0.4
1,127,270 + ABIE41_RS05445 0.42 -2.2
1,127,270 + ABIE41_RS05445 0.42 +0.0
1,127,270 + ABIE41_RS05445 0.42 -0.5
1,127,270 + ABIE41_RS05445 0.42 +0.0
1,127,270 + ABIE41_RS05445 0.42 +0.2
1,127,271 - ABIE41_RS05445 0.43 -0.6
1,127,271 - ABIE41_RS05445 0.43 +0.8
1,127,271 - ABIE41_RS05445 0.43 +0.3
1,127,271 - ABIE41_RS05445 0.43 +0.0
1,127,271 - ABIE41_RS05445 0.43 +1.8
1,127,271 - ABIE41_RS05445 0.43 +0.1
1,127,271 - ABIE41_RS05445 0.43 -0.0
1,127,271 - ABIE41_RS05445 0.43 +0.0
1,127,271 - ABIE41_RS05445 0.43 +2.2
1,127,342 + ABIE41_RS05445 0.58 -0.3
1,127,342 + ABIE41_RS05445 0.58 -0.8
1,127,342 + ABIE41_RS05445 0.58 -1.3
1,127,342 + ABIE41_RS05445 0.58 +0.2
1,127,342 + ABIE41_RS05445 0.58 +1.4
1,127,343 - ABIE41_RS05445 0.58 +3.1
1,127,343 - ABIE41_RS05445 0.58 -1.8
1,127,343 - ABIE41_RS05445 0.58 +0.0
1,127,343 - ABIE41_RS05445 0.58 +0.1
1,127,399 + ABIE41_RS05445 0.71 +1.2
1,127,399 + ABIE41_RS05445 0.71 -0.0
1,127,400 - ABIE41_RS05445 0.71 +0.5
1,127,400 - ABIE41_RS05445 0.71 +1.5
1,127,400 - ABIE41_RS05445 0.71 -0.8
1,127,584 + ABIE41_RS05450 0.11 +2.2
1,127,584 + ABIE41_RS05450 0.11 -1.1
1,127,584 + ABIE41_RS05450 0.11 +1.3
1,127,584 + ABIE41_RS05450 0.11 +0.2
1,127,584 + ABIE41_RS05450 0.11 -0.5
1,127,585 - ABIE41_RS05450 0.12 -1.3
1,127,585 - ABIE41_RS05450 0.12 -0.4
1,127,585 - ABIE41_RS05450 0.12 -0.3
1,127,585 - ABIE41_RS05450 0.12 -0.1
1,127,585 - ABIE41_RS05450 0.12 +1.4
1,127,585 - ABIE41_RS05450 0.12 +1.6
1,127,585 - ABIE41_RS05450 0.12 +0.7
1,129,364 + -1.6
1,129,364 + +1.1
1,129,364 + +1.5
1,129,364 + +0.2
1,129,365 - -0.1
1,129,365 - +0.1
1,129,413 - ABIE41_RS05465 0.15 -0.2
1,129,413 - ABIE41_RS05465 0.15 +0.3
1,129,475 + ABIE41_RS05465 0.24 +0.5
1,129,475 + ABIE41_RS05465 0.24 +0.4
1,129,475 + ABIE41_RS05465 0.24 -0.1
1,129,475 + ABIE41_RS05465 0.24 +1.2
1,129,475 + ABIE41_RS05465 0.24 -1.0
1,129,475 + ABIE41_RS05465 0.24 -0.2
1,129,475 + ABIE41_RS05465 0.24 -0.2
1,129,475 + ABIE41_RS05465 0.24 +0.5
1,129,476 - ABIE41_RS05465 0.24 +1.5
1,129,476 - ABIE41_RS05465 0.24 +0.2
1,129,476 - ABIE41_RS05465 0.24 +0.9
1,129,476 - ABIE41_RS05465 0.24 -0.8
1,129,476 - ABIE41_RS05465 0.24 +1.2
1,129,476 - ABIE41_RS05465 0.24 -1.3
1,129,592 + ABIE41_RS05465 0.39 -1.1
1,129,592 + ABIE41_RS05465 0.39 +0.4
1,129,593 - ABIE41_RS05465 0.39 -0.4

Or see this region's nucleotide sequence