Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02800 and ABIE41_RS02805 are separated by 31 nucleotides ABIE41_RS02805 and ABIE41_RS02810 are separated by 157 nucleotides ABIE41_RS02810 and ABIE41_RS02815 overlap by 4 nucleotides
ABIE41_RS02800: ABIE41_RS02800 - ABC transporter permease, at 574,581 to 575,555
_RS02800
ABIE41_RS02805: ABIE41_RS02805 - creatininase family protein, at 575,587 to 576,288
_RS02805
ABIE41_RS02810: ABIE41_RS02810 - MarR family winged helix-turn-helix transcriptional regulator, at 576,446 to 576,997
_RS02810
ABIE41_RS02815: ABIE41_RS02815 - ABC transporter substrate-binding protein, at 576,994 to 578,583
_RS02815
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 575.473 kb on + strand at 575.473 kb on + strand at 575.544 kb on - strand at 575.551 kb on - strand at 575.551 kb on - strand at 575.551 kb on - strand at 576.002 kb on + strand, within ABIE41_RS02805 at 576.002 kb on + strand, within ABIE41_RS02805 at 576.002 kb on + strand, within ABIE41_RS02805 at 576.002 kb on + strand, within ABIE41_RS02805 at 576.002 kb on + strand, within ABIE41_RS02805 at 576.003 kb on - strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.038 kb on + strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.039 kb on - strand, within ABIE41_RS02805 at 576.072 kb on - strand, within ABIE41_RS02805 at 576.098 kb on + strand, within ABIE41_RS02805 at 576.098 kb on + strand, within ABIE41_RS02805 at 576.098 kb on + strand, within ABIE41_RS02805 at 576.099 kb on - strand, within ABIE41_RS02805 at 576.191 kb on + strand, within ABIE41_RS02805 at 576.192 kb on - strand, within ABIE41_RS02805 at 576.192 kb on - strand, within ABIE41_RS02805 at 576.192 kb on - strand, within ABIE41_RS02805 at 576.192 kb on - strand, within ABIE41_RS02805 at 576.304 kb on - strand at 576.311 kb on + strand at 576.311 kb on + strand at 576.602 kb on + strand, within ABIE41_RS02810 at 576.602 kb on + strand, within ABIE41_RS02810 at 576.602 kb on + strand, within ABIE41_RS02810 at 576.603 kb on - strand, within ABIE41_RS02810 at 576.623 kb on + strand, within ABIE41_RS02810 at 576.624 kb on - strand, within ABIE41_RS02810 at 576.656 kb on + strand, within ABIE41_RS02810 at 576.656 kb on + strand, within ABIE41_RS02810 at 576.656 kb on + strand, within ABIE41_RS02810 at 576.812 kb on + strand, within ABIE41_RS02810 at 576.812 kb on + strand, within ABIE41_RS02810 at 576.813 kb on - strand, within ABIE41_RS02810 at 576.813 kb on - strand, within ABIE41_RS02810 at 576.815 kb on - strand, within ABIE41_RS02810 at 577.049 kb on + strand at 577.158 kb on + strand, within ABIE41_RS02815 at 577.158 kb on + strand, within ABIE41_RS02815 at 577.158 kb on + strand, within ABIE41_RS02815 at 577.158 kb on + strand, within ABIE41_RS02815 at 577.159 kb on - strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.366 kb on + strand, within ABIE41_RS02815 at 577.561 kb on + strand, within ABIE41_RS02815 at 577.562 kb on - strand, within ABIE41_RS02815 at 577.562 kb on - strand, within ABIE41_RS02815 at 577.562 kb on - strand, within ABIE41_RS02815 at 577.562 kb on - strand, within ABIE41_RS02815 at 577.618 kb on + strand, within ABIE41_RS02815 at 577.795 kb on + strand, within ABIE41_RS02815 at 577.795 kb on + strand, within ABIE41_RS02815 at 577.796 kb on - strand, within ABIE41_RS02815 at 577.796 kb on - strand, within ABIE41_RS02815 at 577.796 kb on - strand, within ABIE41_RS02815 at 577.796 kb on - strand, within ABIE41_RS02815 at 577.796 kb on - strand, within ABIE41_RS02815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 575,473 + +0.4 575,473 + -1.1 575,544 - -0.8 575,551 - +0.8 575,551 - -0.4 575,551 - -0.8 576,002 + ABIE41_RS02805 0.59 +0.1 576,002 + ABIE41_RS02805 0.59 -0.2 576,002 + ABIE41_RS02805 0.59 +3.1 576,002 + ABIE41_RS02805 0.59 -0.3 576,002 + ABIE41_RS02805 0.59 -0.2 576,003 - ABIE41_RS02805 0.59 +0.2 576,038 + ABIE41_RS02805 0.64 -1.2 576,038 + ABIE41_RS02805 0.64 +1.0 576,038 + ABIE41_RS02805 0.64 +0.7 576,038 + ABIE41_RS02805 0.64 -0.8 576,038 + ABIE41_RS02805 0.64 +0.3 576,038 + ABIE41_RS02805 0.64 -0.1 576,038 + ABIE41_RS02805 0.64 +1.0 576,038 + ABIE41_RS02805 0.64 -0.1 576,038 + ABIE41_RS02805 0.64 -0.1 576,038 + ABIE41_RS02805 0.64 -0.3 576,039 - ABIE41_RS02805 0.64 +0.9 576,039 - ABIE41_RS02805 0.64 +0.8 576,039 - ABIE41_RS02805 0.64 -0.5 576,039 - ABIE41_RS02805 0.64 +0.0 576,039 - ABIE41_RS02805 0.64 -2.6 576,039 - ABIE41_RS02805 0.64 +0.5 576,039 - ABIE41_RS02805 0.64 +1.5 576,039 - ABIE41_RS02805 0.64 +0.2 576,039 - ABIE41_RS02805 0.64 +4.1 576,039 - ABIE41_RS02805 0.64 +0.4 576,039 - ABIE41_RS02805 0.64 +2.1 576,072 - ABIE41_RS02805 0.69 +0.3 576,098 + ABIE41_RS02805 0.73 -1.4 576,098 + ABIE41_RS02805 0.73 -0.0 576,098 + ABIE41_RS02805 0.73 -0.7 576,099 - ABIE41_RS02805 0.73 +0.8 576,191 + ABIE41_RS02805 0.86 -0.5 576,192 - ABIE41_RS02805 0.86 -0.9 576,192 - ABIE41_RS02805 0.86 -0.2 576,192 - ABIE41_RS02805 0.86 +0.6 576,192 - ABIE41_RS02805 0.86 -1.1 576,304 - +0.7 576,311 + +0.1 576,311 + -0.0 576,602 + ABIE41_RS02810 0.28 +1.2 576,602 + ABIE41_RS02810 0.28 +1.4 576,602 + ABIE41_RS02810 0.28 +0.8 576,603 - ABIE41_RS02810 0.28 +1.1 576,623 + ABIE41_RS02810 0.32 +1.8 576,624 - ABIE41_RS02810 0.32 -0.7 576,656 + ABIE41_RS02810 0.38 +0.5 576,656 + ABIE41_RS02810 0.38 +0.9 576,656 + ABIE41_RS02810 0.38 +1.5 576,812 + ABIE41_RS02810 0.66 +1.2 576,812 + ABIE41_RS02810 0.66 -1.3 576,813 - ABIE41_RS02810 0.66 +0.1 576,813 - ABIE41_RS02810 0.66 +0.4 576,815 - ABIE41_RS02810 0.67 +1.2 577,049 + +0.1 577,158 + ABIE41_RS02815 0.10 +1.5 577,158 + ABIE41_RS02815 0.10 +0.9 577,158 + ABIE41_RS02815 0.10 -0.0 577,158 + ABIE41_RS02815 0.10 +1.4 577,159 - ABIE41_RS02815 0.10 +0.6 577,366 + ABIE41_RS02815 0.23 +1.1 577,366 + ABIE41_RS02815 0.23 -0.3 577,366 + ABIE41_RS02815 0.23 +2.0 577,366 + ABIE41_RS02815 0.23 -0.1 577,366 + ABIE41_RS02815 0.23 +0.7 577,366 + ABIE41_RS02815 0.23 +0.2 577,561 + ABIE41_RS02815 0.36 +0.2 577,562 - ABIE41_RS02815 0.36 -0.5 577,562 - ABIE41_RS02815 0.36 +0.5 577,562 - ABIE41_RS02815 0.36 +0.5 577,562 - ABIE41_RS02815 0.36 +0.3 577,618 + ABIE41_RS02815 0.39 +1.2 577,795 + ABIE41_RS02815 0.50 -0.0 577,795 + ABIE41_RS02815 0.50 +1.2 577,796 - ABIE41_RS02815 0.50 -1.1 577,796 - ABIE41_RS02815 0.50 -1.1 577,796 - ABIE41_RS02815 0.50 +0.5 577,796 - ABIE41_RS02815 0.50 +1.9 577,796 - ABIE41_RS02815 0.50 -0.5
Or see this region's nucleotide sequence