Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01950 and ABIE41_RS01955 are separated by 255 nucleotides ABIE41_RS01955 and ABIE41_RS01960 overlap by 17 nucleotides ABIE41_RS01960 and ABIE41_RS01965 are separated by 2 nucleotides ABIE41_RS01965 and ABIE41_RS01970 are separated by 67 nucleotides
ABIE41_RS01950: ABIE41_RS01950 - VOC family protein, at 392,427 to 393,209
_RS01950
ABIE41_RS01955: ABIE41_RS01955 - hypothetical protein, at 393,465 to 394,226
_RS01955
ABIE41_RS01960: ABIE41_RS01960 - hypothetical protein, at 394,210 to 394,659
_RS01960
ABIE41_RS01965: ABIE41_RS01965 - hypothetical protein, at 394,662 to 395,129
_RS01965
ABIE41_RS01970: ABIE41_RS01970 - hypothetical protein, at 395,197 to 396,021
_RS01970
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 392.942 kb on + strand, within ABIE41_RS01950 at 392.943 kb on - strand, within ABIE41_RS01950 at 393.058 kb on + strand, within ABIE41_RS01950 at 393.143 kb on + strand at 393.143 kb on + strand at 393.143 kb on + strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.145 kb on + strand at 393.145 kb on + strand at 393.146 kb on - strand at 393.146 kb on - strand at 393.188 kb on + strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.379 kb on - strand at 393.395 kb on - strand at 393.399 kb on - strand at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 392,942 + ABIE41_RS01950 0.66 -0.4 392,943 - ABIE41_RS01950 0.66 -0.1 393,058 + ABIE41_RS01950 0.81 +0.5 393,143 + -1.1 393,143 + +0.8 393,143 + +0.0 393,144 - -0.4 393,144 - -0.6 393,144 - -0.8 393,144 - +0.5 393,144 - +0.1 393,144 - +0.3 393,145 + -0.1 393,145 + +0.8 393,146 - +0.7 393,146 - +0.0 393,188 + -0.2 393,189 - +0.1 393,189 - -1.0 393,189 - -1.0 393,189 - +0.7 393,379 - -0.1 393,395 - +0.1 393,399 - -1.5 395,076 + ABIE41_RS01965 0.88 -0.8 395,076 + ABIE41_RS01965 0.88 +0.1 395,076 + ABIE41_RS01965 0.88 -2.6 395,076 + ABIE41_RS01965 0.88 -0.0 395,076 + ABIE41_RS01965 0.88 +0.9 395,077 - ABIE41_RS01965 0.89 -0.5 395,077 - ABIE41_RS01965 0.89 -0.9 395,077 - ABIE41_RS01965 0.89 +0.1 395,077 - ABIE41_RS01965 0.89 +0.5 395,077 - ABIE41_RS01965 0.89 -0.0 395,078 + ABIE41_RS01965 0.89 -1.7 395,078 + ABIE41_RS01965 0.89 -0.4 395,078 + ABIE41_RS01965 0.89 -0.4 395,078 + ABIE41_RS01965 0.89 -0.3 395,078 + ABIE41_RS01965 0.89 -0.5 395,078 + ABIE41_RS01965 0.89 -0.3 395,078 + ABIE41_RS01965 0.89 +0.1 395,079 - ABIE41_RS01965 0.89 +0.7 395,079 - ABIE41_RS01965 0.89 -0.7 395,079 - ABIE41_RS01965 0.89 -0.7 395,079 - ABIE41_RS01965 0.89 -1.0 395,079 - ABIE41_RS01965 0.89 -0.3 395,079 - ABIE41_RS01965 0.89 -1.0 395,079 - ABIE41_RS01965 0.89 +0.3 395,079 - ABIE41_RS01965 0.89 -0.5 395,079 - ABIE41_RS01965 0.89 -1.2 395,079 - ABIE41_RS01965 0.89 +0.8 395,079 - ABIE41_RS01965 0.89 -1.3
Or see this region's nucleotide sequence