Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01610 and ABIE41_RS01615 are separated by 38 nucleotides ABIE41_RS01615 and ABIE41_RS01620 are separated by 14 nucleotides ABIE41_RS01620 and ABIE41_RS01625 are separated by 5 nucleotides
ABIE41_RS01610: ABIE41_RS01610 - amidohydrolase family protein, at 323,579 to 325,012
_RS01610
ABIE41_RS01615: ABIE41_RS01615 - ABC transporter permease, at 325,051 to 325,833
_RS01615
ABIE41_RS01620: ABIE41_RS01620 - ABC transporter ATP-binding protein, at 325,848 to 326,708
_RS01620
ABIE41_RS01625: ABIE41_RS01625 - allantoinase AllB, at 326,714 to 328,168
_RS01625
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 324.959 kb on - strand at 324.959 kb on - strand at 325.124 kb on + strand at 325.124 kb on + strand at 325.124 kb on + strand at 325.125 kb on - strand at 325.125 kb on - strand at 325.125 kb on - strand at 325.125 kb on - strand at 325.125 kb on - strand at 325.285 kb on - strand, within ABIE41_RS01615 at 325.301 kb on + strand, within ABIE41_RS01615 at 325.302 kb on - strand, within ABIE41_RS01615 at 325.547 kb on + strand, within ABIE41_RS01615 at 325.547 kb on + strand, within ABIE41_RS01615 at 325.559 kb on + strand, within ABIE41_RS01615 at 325.560 kb on - strand, within ABIE41_RS01615 at 325.640 kb on + strand, within ABIE41_RS01615 at 325.641 kb on - strand, within ABIE41_RS01615 at 325.680 kb on - strand, within ABIE41_RS01615 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.048 kb on - strand, within ABIE41_RS01620 at 326.254 kb on + strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.425 kb on + strand, within ABIE41_RS01620 at 326.632 kb on + strand at 326.632 kb on + strand at 326.632 kb on + strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.696 kb on + strand at 326.696 kb on + strand at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.360 kb on + strand, within ABIE41_RS01625 at 327.360 kb on + strand, within ABIE41_RS01625 at 327.361 kb on - strand, within ABIE41_RS01625 at 327.361 kb on - strand, within ABIE41_RS01625 at 327.535 kb on + strand, within ABIE41_RS01625 at 327.536 kb on - strand, within ABIE41_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 324,959 - +1.1 324,959 - -0.5 325,124 + -0.1 325,124 + +2.1 325,124 + -1.8 325,125 - +0.9 325,125 - +1.5 325,125 - +0.2 325,125 - +0.3 325,125 - +1.7 325,285 - ABIE41_RS01615 0.30 -0.4 325,301 + ABIE41_RS01615 0.32 -0.1 325,302 - ABIE41_RS01615 0.32 -0.6 325,547 + ABIE41_RS01615 0.63 +0.5 325,547 + ABIE41_RS01615 0.63 -0.6 325,559 + ABIE41_RS01615 0.65 -0.4 325,560 - ABIE41_RS01615 0.65 -0.5 325,640 + ABIE41_RS01615 0.75 +0.4 325,641 - ABIE41_RS01615 0.75 +0.1 325,680 - ABIE41_RS01615 0.80 -0.3 326,047 + ABIE41_RS01620 0.23 -0.8 326,047 + ABIE41_RS01620 0.23 +0.5 326,047 + ABIE41_RS01620 0.23 +0.1 326,048 - ABIE41_RS01620 0.23 +0.0 326,254 + ABIE41_RS01620 0.47 +0.2 326,255 - ABIE41_RS01620 0.47 -1.2 326,255 - ABIE41_RS01620 0.47 +0.6 326,255 - ABIE41_RS01620 0.47 +0.6 326,255 - ABIE41_RS01620 0.47 +0.3 326,255 - ABIE41_RS01620 0.47 +0.3 326,425 + ABIE41_RS01620 0.67 +0.0 326,632 + -0.4 326,632 + +0.2 326,632 + -0.1 326,633 - +0.3 326,633 - -0.1 326,633 - +0.1 326,633 - +1.2 326,633 - -2.6 326,696 + -0.5 326,696 + +0.3 327,090 + ABIE41_RS01625 0.26 +0.3 327,090 + ABIE41_RS01625 0.26 +3.5 327,090 + ABIE41_RS01625 0.26 +0.7 327,090 + ABIE41_RS01625 0.26 +0.1 327,090 + ABIE41_RS01625 0.26 +0.3 327,090 + ABIE41_RS01625 0.26 +0.4 327,091 - ABIE41_RS01625 0.26 +0.1 327,091 - ABIE41_RS01625 0.26 -1.5 327,091 - ABIE41_RS01625 0.26 -0.0 327,091 - ABIE41_RS01625 0.26 +0.5 327,091 - ABIE41_RS01625 0.26 +0.5 327,091 - ABIE41_RS01625 0.26 -0.7 327,360 + ABIE41_RS01625 0.44 +0.9 327,360 + ABIE41_RS01625 0.44 -0.7 327,361 - ABIE41_RS01625 0.44 +0.1 327,361 - ABIE41_RS01625 0.44 -0.4 327,535 + ABIE41_RS01625 0.56 +0.7 327,536 - ABIE41_RS01625 0.56 +0.1
Or see this region's nucleotide sequence