Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00280

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00275 and ABIE41_RS00280 are separated by 102 nucleotidesABIE41_RS00280 and ABIE41_RS00285 are separated by 21 nucleotidesABIE41_RS00285 and ABIE41_RS00290 overlap by 1 nucleotides ABIE41_RS00275: ABIE41_RS00275 - tripartite tricarboxylate transporter substrate binding protein, at 47,286 to 48,272 _RS00275 ABIE41_RS00280: ABIE41_RS00280 - DUF3309 family protein, at 48,375 to 48,548 _RS00280 ABIE41_RS00285: ABIE41_RS00285 - ornithine cyclodeaminase family protein, at 48,570 to 49,520 _RS00285 ABIE41_RS00290: ABIE41_RS00290 - LapA family protein, at 49,520 to 49,858 _RS00290 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.567 kb on + strand, within ABIE41_RS00275at 47.568 kb on - strand, within ABIE41_RS00275at 47.607 kb on + strand, within ABIE41_RS00275at 47.607 kb on + strand, within ABIE41_RS00275at 47.607 kb on + strand, within ABIE41_RS00275at 47.607 kb on + strand, within ABIE41_RS00275at 47.607 kb on + strand, within ABIE41_RS00275at 47.608 kb on - strand, within ABIE41_RS00275at 47.608 kb on - strand, within ABIE41_RS00275at 47.608 kb on - strand, within ABIE41_RS00275at 47.613 kb on + strand, within ABIE41_RS00275at 47.628 kb on + strand, within ABIE41_RS00275at 47.628 kb on + strand, within ABIE41_RS00275at 47.629 kb on - strand, within ABIE41_RS00275at 47.736 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.766 kb on + strand, within ABIE41_RS00275at 47.767 kb on - strand, within ABIE41_RS00275at 47.767 kb on - strand, within ABIE41_RS00275at 47.767 kb on - strand, within ABIE41_RS00275at 47.767 kb on - strand, within ABIE41_RS00275at 47.767 kb on - strand, within ABIE41_RS00275at 47.811 kb on + strand, within ABIE41_RS00275at 47.811 kb on + strand, within ABIE41_RS00275at 47.812 kb on - strand, within ABIE41_RS00275at 48.270 kb on + strandat 48.270 kb on + strandat 48.271 kb on - strandat 48.432 kb on + strand, within ABIE41_RS00280at 48.432 kb on + strand, within ABIE41_RS00280at 48.432 kb on + strand, within ABIE41_RS00280at 48.433 kb on - strand, within ABIE41_RS00280at 48.433 kb on - strand, within ABIE41_RS00280at 48.447 kb on + strand, within ABIE41_RS00280at 48.448 kb on - strand, within ABIE41_RS00280at 48.448 kb on - strand, within ABIE41_RS00280at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.731 kb on - strand, within ABIE41_RS00285at 48.848 kb on + strand, within ABIE41_RS00285at 49.093 kb on - strand, within ABIE41_RS00285at 49.093 kb on - strand, within ABIE41_RS00285at 49.258 kb on + strand, within ABIE41_RS00285at 49.259 kb on - strand, within ABIE41_RS00285at 49.259 kb on - strand, within ABIE41_RS00285at 49.328 kb on + strand, within ABIE41_RS00285at 49.330 kb on + strand, within ABIE41_RS00285

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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47,567 + ABIE41_RS00275 0.28 -0.9
47,568 - ABIE41_RS00275 0.29 -0.8
47,607 + ABIE41_RS00275 0.33 +0.3
47,607 + ABIE41_RS00275 0.33 +0.2
47,607 + ABIE41_RS00275 0.33 -0.8
47,607 + ABIE41_RS00275 0.33 -0.4
47,607 + ABIE41_RS00275 0.33 -0.1
47,608 - ABIE41_RS00275 0.33 +0.1
47,608 - ABIE41_RS00275 0.33 -0.8
47,608 - ABIE41_RS00275 0.33 +2.1
47,613 + ABIE41_RS00275 0.33 -0.4
47,628 + ABIE41_RS00275 0.35 +0.3
47,628 + ABIE41_RS00275 0.35 -0.2
47,629 - ABIE41_RS00275 0.35 +0.2
47,736 + ABIE41_RS00275 0.46 -0.5
47,766 + ABIE41_RS00275 0.49 -0.5
47,766 + ABIE41_RS00275 0.49 -0.0
47,766 + ABIE41_RS00275 0.49 +0.2
47,766 + ABIE41_RS00275 0.49 -2.4
47,766 + ABIE41_RS00275 0.49 +1.0
47,766 + ABIE41_RS00275 0.49 +0.5
47,767 - ABIE41_RS00275 0.49 +0.0
47,767 - ABIE41_RS00275 0.49 +1.8
47,767 - ABIE41_RS00275 0.49 -1.2
47,767 - ABIE41_RS00275 0.49 +0.6
47,767 - ABIE41_RS00275 0.49 +0.5
47,811 + ABIE41_RS00275 0.53 +1.1
47,811 + ABIE41_RS00275 0.53 +0.5
47,812 - ABIE41_RS00275 0.53 +0.7
48,270 + -1.0
48,270 + -0.2
48,271 - -0.5
48,432 + ABIE41_RS00280 0.33 -0.1
48,432 + ABIE41_RS00280 0.33 -1.6
48,432 + ABIE41_RS00280 0.33 +0.2
48,433 - ABIE41_RS00280 0.33 +0.1
48,433 - ABIE41_RS00280 0.33 +0.6
48,447 + ABIE41_RS00280 0.41 -0.3
48,448 - ABIE41_RS00280 0.42 -1.1
48,448 - ABIE41_RS00280 0.42 -0.1
48,730 + ABIE41_RS00285 0.17 -0.4
48,730 + ABIE41_RS00285 0.17 +1.2
48,730 + ABIE41_RS00285 0.17 +0.1
48,730 + ABIE41_RS00285 0.17 +0.5
48,731 - ABIE41_RS00285 0.17 +1.5
48,848 + ABIE41_RS00285 0.29 +0.7
49,093 - ABIE41_RS00285 0.55 -1.1
49,093 - ABIE41_RS00285 0.55 +1.8
49,258 + ABIE41_RS00285 0.72 +0.9
49,259 - ABIE41_RS00285 0.72 -0.2
49,259 - ABIE41_RS00285 0.72 -0.5
49,328 + ABIE41_RS00285 0.80 -0.4
49,330 + ABIE41_RS00285 0.80 +2.1

Or see this region's nucleotide sequence