Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21885 and ABID97_RS21890 overlap by 8 nucleotides ABID97_RS21890 and ABID97_RS21895 overlap by 4 nucleotides ABID97_RS21895 and ABID97_RS21900 are separated by 111 nucleotides
ABID97_RS21885: ABID97_RS21885 - DUF1295 domain-containing protein, at 4,527,416 to 4,528,222
_RS21885
ABID97_RS21890: ABID97_RS21890 - DUF2878 domain-containing protein, at 4,528,215 to 4,528,769
_RS21890
ABID97_RS21895: ABID97_RS21895 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 4,528,766 to 4,529,809
_RS21895
ABID97_RS21900: ABID97_RS21900 - LysR family transcriptional regulator, at 4,529,921 to 4,530,934
_RS21900
Position (kb) 4528
4529
4530 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4528.065 kb on + strand, within ABID97_RS21885 at 4528.065 kb on + strand, within ABID97_RS21885 at 4528.066 kb on - strand, within ABID97_RS21885 at 4528.523 kb on - strand, within ABID97_RS21890 at 4528.788 kb on + strand at 4528.789 kb on - strand at 4528.789 kb on - strand at 4528.893 kb on + strand, within ABID97_RS21895 at 4529.112 kb on + strand, within ABID97_RS21895 at 4529.113 kb on - strand, within ABID97_RS21895 at 4529.331 kb on + strand, within ABID97_RS21895 at 4529.332 kb on - strand, within ABID97_RS21895 at 4529.541 kb on + strand, within ABID97_RS21895 at 4529.541 kb on + strand, within ABID97_RS21895 at 4529.541 kb on + strand, within ABID97_RS21895 at 4529.541 kb on + strand, within ABID97_RS21895 at 4529.542 kb on - strand, within ABID97_RS21895 at 4529.542 kb on - strand, within ABID97_RS21895 at 4529.591 kb on + strand, within ABID97_RS21895 at 4529.592 kb on + strand, within ABID97_RS21895 at 4529.857 kb on + strand at 4529.859 kb on + strand at 4529.859 kb on + strand at 4529.859 kb on + strand at 4529.860 kb on - strand at 4529.860 kb on - strand at 4529.860 kb on - strand at 4530.026 kb on + strand, within ABID97_RS21900 at 4530.027 kb on - strand, within ABID97_RS21900 at 4530.272 kb on + strand, within ABID97_RS21900 at 4530.272 kb on + strand, within ABID97_RS21900 at 4530.284 kb on + strand, within ABID97_RS21900 at 4530.285 kb on - strand, within ABID97_RS21900 at 4530.285 kb on - strand, within ABID97_RS21900 at 4530.629 kb on + strand, within ABID97_RS21900
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,528,065 + ABID97_RS21885 0.80 -0.2 4,528,065 + ABID97_RS21885 0.80 -0.4 4,528,066 - ABID97_RS21885 0.81 -0.4 4,528,523 - ABID97_RS21890 0.55 -0.6 4,528,788 + +1.0 4,528,789 - -0.4 4,528,789 - +0.0 4,528,893 + ABID97_RS21895 0.12 +0.0 4,529,112 + ABID97_RS21895 0.33 +0.1 4,529,113 - ABID97_RS21895 0.33 +0.4 4,529,331 + ABID97_RS21895 0.54 -0.1 4,529,332 - ABID97_RS21895 0.54 +1.9 4,529,541 + ABID97_RS21895 0.74 -0.3 4,529,541 + ABID97_RS21895 0.74 -0.2 4,529,541 + ABID97_RS21895 0.74 +0.8 4,529,541 + ABID97_RS21895 0.74 +0.5 4,529,542 - ABID97_RS21895 0.74 -0.1 4,529,542 - ABID97_RS21895 0.74 +1.2 4,529,591 + ABID97_RS21895 0.79 -0.1 4,529,592 + ABID97_RS21895 0.79 -1.1 4,529,857 + +0.1 4,529,859 + -0.9 4,529,859 + -0.2 4,529,859 + +0.1 4,529,860 - +0.7 4,529,860 - -0.2 4,529,860 - -0.6 4,530,026 + ABID97_RS21900 0.10 +0.1 4,530,027 - ABID97_RS21900 0.10 -0.5 4,530,272 + ABID97_RS21900 0.35 +0.6 4,530,272 + ABID97_RS21900 0.35 -2.1 4,530,284 + ABID97_RS21900 0.36 +0.0 4,530,285 - ABID97_RS21900 0.36 +1.2 4,530,285 - ABID97_RS21900 0.36 -0.1 4,530,629 + ABID97_RS21900 0.70 -0.1
Or see this region's nucleotide sequence