Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20150

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20135 and ABID97_RS20140 are separated by 96 nucleotidesABID97_RS20140 and ABID97_RS20145 are separated by 93 nucleotidesABID97_RS20145 and ABID97_RS20150 overlap by 11 nucleotidesABID97_RS20150 and ABID97_RS20155 are separated by 14 nucleotidesABID97_RS20155 and ABID97_RS20160 are separated by 91 nucleotides ABID97_RS20135: ABID97_RS20135 - MBL fold metallo-hydrolase, at 4,161,855 to 4,162,631 _RS20135 ABID97_RS20140: ABID97_RS20140 - hypothetical protein, at 4,162,728 to 4,162,997 _RS20140 ABID97_RS20145: ABID97_RS20145 - hypothetical protein, at 4,163,091 to 4,163,606 _RS20145 ABID97_RS20150: ABID97_RS20150 - cupin domain-containing protein, at 4,163,596 to 4,164,738 _RS20150 ABID97_RS20155: ABID97_RS20155 - peptidylprolyl isomerase, at 4,164,753 to 4,165,277 _RS20155 ABID97_RS20160: ABID97_RS20160 - glycine zipper 2TM domain-containing protein, at 4,165,369 to 4,165,869 _RS20160 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -1 0 1at 4162.729 kb on + strandat 4162.730 kb on - strandat 4163.093 kb on - strandat 4163.093 kb on - strandat 4163.759 kb on + strand, within ABID97_RS20150at 4163.760 kb on - strand, within ABID97_RS20150at 4163.760 kb on - strand, within ABID97_RS20150at 4163.778 kb on - strand, within ABID97_RS20150at 4164.164 kb on + strand, within ABID97_RS20150at 4164.165 kb on - strand, within ABID97_RS20150at 4164.179 kb on + strand, within ABID97_RS20150at 4164.179 kb on + strand, within ABID97_RS20150at 4164.180 kb on - strand, within ABID97_RS20150at 4164.180 kb on - strand, within ABID97_RS20150at 4164.329 kb on + strand, within ABID97_RS20150at 4164.330 kb on - strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.372 kb on - strand, within ABID97_RS20150at 4164.729 kb on + strandat 4164.729 kb on + strandat 4164.730 kb on - strandat 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.488 kb on - strand, within ABID97_RS20160at 4165.488 kb on - strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.719 kb on - strand, within ABID97_RS20160at 4165.719 kb on - strand, within ABID97_RS20160at 4165.733 kb on + strand, within ABID97_RS20160

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,162,729 + +0.5
4,162,730 - -0.5
4,163,093 - -0.1
4,163,093 - -0.6
4,163,759 + ABID97_RS20150 0.14 +0.0
4,163,760 - ABID97_RS20150 0.14 +0.7
4,163,760 - ABID97_RS20150 0.14 +0.5
4,163,778 - ABID97_RS20150 0.16 +0.0
4,164,164 + ABID97_RS20150 0.50 -0.8
4,164,165 - ABID97_RS20150 0.50 +0.3
4,164,179 + ABID97_RS20150 0.51 +0.6
4,164,179 + ABID97_RS20150 0.51 +0.1
4,164,180 - ABID97_RS20150 0.51 +1.3
4,164,180 - ABID97_RS20150 0.51 +1.4
4,164,329 + ABID97_RS20150 0.64 +0.4
4,164,330 - ABID97_RS20150 0.64 +0.9
4,164,371 + ABID97_RS20150 0.68 +0.0
4,164,371 + ABID97_RS20150 0.68 +0.4
4,164,371 + ABID97_RS20150 0.68 +0.1
4,164,372 - ABID97_RS20150 0.68 -0.3
4,164,729 + +1.1
4,164,729 + -0.1
4,164,730 - -1.4
4,165,083 + ABID97_RS20155 0.63 +1.1
4,165,083 + ABID97_RS20155 0.63 -0.6
4,165,083 + ABID97_RS20155 0.63 -1.4
4,165,083 + ABID97_RS20155 0.63 -0.1
4,165,083 + ABID97_RS20155 0.63 -0.3
4,165,083 + ABID97_RS20155 0.63 -1.1
4,165,084 - ABID97_RS20155 0.63 -0.1
4,165,084 - ABID97_RS20155 0.63 -0.3
4,165,084 - ABID97_RS20155 0.63 -0.0
4,165,084 - ABID97_RS20155 0.63 -0.5
4,165,084 - ABID97_RS20155 0.63 -0.0
4,165,370 + +0.0
4,165,370 + -0.7
4,165,370 + +0.3
4,165,370 + +0.3
4,165,370 + -0.6
4,165,370 + -0.2
4,165,370 + -0.7
4,165,371 - -0.0
4,165,371 - +0.2
4,165,371 - -0.7
4,165,371 - -0.6
4,165,488 - ABID97_RS20160 0.24 -0.2
4,165,488 - ABID97_RS20160 0.24 +0.2
4,165,718 + ABID97_RS20160 0.70 -0.4
4,165,718 + ABID97_RS20160 0.70 -0.4
4,165,718 + ABID97_RS20160 0.70 -0.6
4,165,719 - ABID97_RS20160 0.70 +0.6
4,165,719 - ABID97_RS20160 0.70 -0.0
4,165,733 + ABID97_RS20160 0.73 -0.3

Or see this region's nucleotide sequence