Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11715

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11710 and ABID97_RS11715 are separated by 146 nucleotidesABID97_RS11715 and ABID97_RS11720 are separated by 13 nucleotides ABID97_RS11710: ABID97_RS11710 - LysR substrate-binding domain-containing protein, at 2,421,814 to 2,422,728 _RS11710 ABID97_RS11715: ABID97_RS11715 - TIM barrel protein, at 2,422,875 to 2,423,690 _RS11715 ABID97_RS11720: ABID97_RS11720 - Rieske 2Fe-2S domain-containing protein, at 2,423,704 to 2,425,056 _RS11720 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -1 0 1at 2422.809 kb on + strandat 2422.849 kb on + strandat 2422.850 kb on - strandat 2423.226 kb on - strand, within ABID97_RS11715at 2423.490 kb on + strand, within ABID97_RS11715at 2424.106 kb on + strand, within ABID97_RS11720at 2424.551 kb on - strand, within ABID97_RS11720at 2424.556 kb on + strand, within ABID97_RS11720at 2424.647 kb on - strand, within ABID97_RS11720

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,422,809 + -0.8
2,422,849 + +0.1
2,422,850 - +0.2
2,423,226 - ABID97_RS11715 0.43 +0.0
2,423,490 + ABID97_RS11715 0.75 -0.0
2,424,106 + ABID97_RS11720 0.30 +0.0
2,424,551 - ABID97_RS11720 0.63 +0.3
2,424,556 + ABID97_RS11720 0.63 +0.3
2,424,647 - ABID97_RS11720 0.70 -0.3

Or see this region's nucleotide sequence