Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01825

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01815 and ABID97_RS01820 overlap by 4 nucleotidesABID97_RS01820 and ABID97_RS01825 are separated by 160 nucleotidesABID97_RS01825 and ABID97_RS01830 are separated by 18 nucleotides ABID97_RS01815: ABID97_RS01815 - hypothetical protein, at 355,188 to 355,694 _RS01815 ABID97_RS01820: ABID97_RS01820 - peptide deformylase, at 355,691 to 356,212 _RS01820 ABID97_RS01825: ABID97_RS01825 - LysM peptidoglycan-binding domain-containing protein, at 356,373 to 357,587 _RS01825 ABID97_RS01830: ABID97_RS01830 - DNA-processing protein DprA, at 357,606 to 358,766 _RS01830 Position (kb) 356 357 358Strain fitness (log2 ratio) -2 -1 0 1at 355.511 kb on - strand, within ABID97_RS01815at 355.774 kb on - strand, within ABID97_RS01820at 355.774 kb on - strand, within ABID97_RS01820at 356.235 kb on + strandat 356.236 kb on - strandat 356.335 kb on + strandat 356.335 kb on + strandat 356.336 kb on - strandat 356.336 kb on - strandat 356.414 kb on - strandat 356.476 kb on - strandat 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.569 kb on - strand, within ABID97_RS01825at 356.688 kb on + strand, within ABID97_RS01825at 356.689 kb on - strand, within ABID97_RS01825at 356.706 kb on + strand, within ABID97_RS01825at 356.706 kb on + strand, within ABID97_RS01825at 356.706 kb on + strand, within ABID97_RS01825at 356.707 kb on - strand, within ABID97_RS01825at 356.967 kb on + strand, within ABID97_RS01825at 356.968 kb on - strand, within ABID97_RS01825at 356.968 kb on - strand, within ABID97_RS01825at 356.988 kb on - strand, within ABID97_RS01825at 357.096 kb on + strand, within ABID97_RS01825at 357.096 kb on + strand, within ABID97_RS01825at 357.096 kb on + strand, within ABID97_RS01825at 357.096 kb on + strand, within ABID97_RS01825at 357.096 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.264 kb on + strand, within ABID97_RS01825at 357.265 kb on - strand, within ABID97_RS01825at 357.265 kb on - strand, within ABID97_RS01825at 357.265 kb on - strand, within ABID97_RS01825at 357.265 kb on - strand, within ABID97_RS01825at 357.265 kb on - strand, within ABID97_RS01825at 357.315 kb on + strand, within ABID97_RS01825at 357.545 kb on + strandat 357.546 kb on - strandat 357.933 kb on + strand, within ABID97_RS01830at 357.933 kb on + strand, within ABID97_RS01830at 357.933 kb on + strand, within ABID97_RS01830at 357.933 kb on + strand, within ABID97_RS01830at 357.933 kb on + strand, within ABID97_RS01830at 357.933 kb on + strand, within ABID97_RS01830at 357.934 kb on - strand, within ABID97_RS01830at 357.934 kb on - strand, within ABID97_RS01830at 357.982 kb on + strand, within ABID97_RS01830at 358.191 kb on + strand, within ABID97_RS01830

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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355,511 - ABID97_RS01815 0.64 -0.1
355,774 - ABID97_RS01820 0.16 -0.8
355,774 - ABID97_RS01820 0.16 +0.5
356,235 + -0.4
356,236 - -0.3
356,335 + +0.5
356,335 + -1.5
356,336 - -0.0
356,336 - -0.4
356,414 - -1.8
356,476 - +0.8
356,568 + ABID97_RS01825 0.16 -1.3
356,568 + ABID97_RS01825 0.16 -1.2
356,568 + ABID97_RS01825 0.16 +0.3
356,568 + ABID97_RS01825 0.16 -1.0
356,569 - ABID97_RS01825 0.16 -0.4
356,688 + ABID97_RS01825 0.26 -0.4
356,689 - ABID97_RS01825 0.26 -1.2
356,706 + ABID97_RS01825 0.27 -1.0
356,706 + ABID97_RS01825 0.27 -1.3
356,706 + ABID97_RS01825 0.27 -1.3
356,707 - ABID97_RS01825 0.27 -1.3
356,967 + ABID97_RS01825 0.49 -1.4
356,968 - ABID97_RS01825 0.49 -0.8
356,968 - ABID97_RS01825 0.49 -1.3
356,988 - ABID97_RS01825 0.51 -1.3
357,096 + ABID97_RS01825 0.60 -0.8
357,096 + ABID97_RS01825 0.60 -1.5
357,096 + ABID97_RS01825 0.60 -1.4
357,096 + ABID97_RS01825 0.60 +1.2
357,096 + ABID97_RS01825 0.60 -0.8
357,264 + ABID97_RS01825 0.73 -1.2
357,264 + ABID97_RS01825 0.73 -2.0
357,264 + ABID97_RS01825 0.73 -2.0
357,264 + ABID97_RS01825 0.73 -2.1
357,264 + ABID97_RS01825 0.73 -0.2
357,264 + ABID97_RS01825 0.73 -0.3
357,265 - ABID97_RS01825 0.73 -0.8
357,265 - ABID97_RS01825 0.73 -1.1
357,265 - ABID97_RS01825 0.73 -1.3
357,265 - ABID97_RS01825 0.73 -1.4
357,265 - ABID97_RS01825 0.73 -1.1
357,315 + ABID97_RS01825 0.78 -0.9
357,545 + -1.4
357,546 - -0.6
357,933 + ABID97_RS01830 0.28 +0.1
357,933 + ABID97_RS01830 0.28 -0.2
357,933 + ABID97_RS01830 0.28 -0.4
357,933 + ABID97_RS01830 0.28 -0.1
357,933 + ABID97_RS01830 0.28 +0.2
357,933 + ABID97_RS01830 0.28 +0.7
357,934 - ABID97_RS01830 0.28 +0.1
357,934 - ABID97_RS01830 0.28 -0.2
357,982 + ABID97_RS01830 0.32 -0.0
358,191 + ABID97_RS01830 0.50 -0.2

Or see this region's nucleotide sequence