Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01815

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01805 and ABID97_RS01810 overlap by 1 nucleotidesABID97_RS01810 and ABID97_RS01815 overlap by 4 nucleotidesABID97_RS01815 and ABID97_RS01820 overlap by 4 nucleotidesABID97_RS01820 and ABID97_RS01825 are separated by 160 nucleotides ABID97_RS01805: ABID97_RS01805 - AzlC family ABC transporter permease, at 353,486 to 354,226 _RS01805 ABID97_RS01810: ABID97_RS01810 - methionyl-tRNA formyltransferase, at 354,226 to 355,191 _RS01810 ABID97_RS01815: ABID97_RS01815 - hypothetical protein, at 355,188 to 355,694 _RS01815 ABID97_RS01820: ABID97_RS01820 - peptide deformylase, at 355,691 to 356,212 _RS01820 ABID97_RS01825: ABID97_RS01825 - LysM peptidoglycan-binding domain-containing protein, at 356,373 to 357,587 _RS01825 Position (kb) 355 356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 355.232 kb on - strandat 355.232 kb on - strandat 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.265 kb on + strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.297 kb on + strand, within ABID97_RS01815at 355.297 kb on + strand, within ABID97_RS01815at 355.298 kb on - strand, within ABID97_RS01815at 355.298 kb on - strand, within ABID97_RS01815at 355.348 kb on + strand, within ABID97_RS01815at 355.349 kb on - strand, within ABID97_RS01815at 355.360 kb on + strand, within ABID97_RS01815at 355.360 kb on + strand, within ABID97_RS01815at 355.511 kb on - strand, within ABID97_RS01815at 355.774 kb on - strand, within ABID97_RS01820at 355.774 kb on - strand, within ABID97_RS01820at 356.235 kb on + strandat 356.236 kb on - strandat 356.335 kb on + strandat 356.335 kb on + strandat 356.336 kb on - strandat 356.336 kb on - strandat 356.414 kb on - strandat 356.476 kb on - strandat 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.568 kb on + strand, within ABID97_RS01825at 356.569 kb on - strand, within ABID97_RS01825at 356.688 kb on + strand, within ABID97_RS01825at 356.689 kb on - strand, within ABID97_RS01825

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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355,232 - +1.6
355,232 - -0.4
355,261 + ABID97_RS01815 0.14 +0.3
355,261 + ABID97_RS01815 0.14 -0.3
355,261 + ABID97_RS01815 0.14 +0.3
355,261 + ABID97_RS01815 0.14 +0.2
355,261 + ABID97_RS01815 0.14 +0.5
355,261 + ABID97_RS01815 0.14 +0.8
355,261 + ABID97_RS01815 0.14 +0.2
355,261 + ABID97_RS01815 0.14 +0.4
355,262 - ABID97_RS01815 0.15 +0.1
355,262 - ABID97_RS01815 0.15 -1.5
355,262 - ABID97_RS01815 0.15 -1.1
355,265 + ABID97_RS01815 0.15 +2.8
355,266 - ABID97_RS01815 0.15 -0.2
355,266 - ABID97_RS01815 0.15 +1.6
355,266 - ABID97_RS01815 0.15 -0.2
355,266 - ABID97_RS01815 0.15 -0.5
355,267 + ABID97_RS01815 0.16 -0.1
355,267 + ABID97_RS01815 0.16 -0.0
355,267 + ABID97_RS01815 0.16 -1.0
355,267 + ABID97_RS01815 0.16 +0.4
355,267 + ABID97_RS01815 0.16 -0.7
355,267 + ABID97_RS01815 0.16 +0.3
355,267 + ABID97_RS01815 0.16 +2.0
355,267 + ABID97_RS01815 0.16 -0.1
355,267 + ABID97_RS01815 0.16 -0.0
355,267 + ABID97_RS01815 0.16 +0.1
355,267 + ABID97_RS01815 0.16 +0.1
355,268 - ABID97_RS01815 0.16 -0.0
355,268 - ABID97_RS01815 0.16 -1.7
355,268 - ABID97_RS01815 0.16 +0.3
355,268 - ABID97_RS01815 0.16 -0.3
355,268 - ABID97_RS01815 0.16 +0.0
355,268 - ABID97_RS01815 0.16 +0.6
355,268 - ABID97_RS01815 0.16 +0.8
355,268 - ABID97_RS01815 0.16 -0.4
355,297 + ABID97_RS01815 0.21 -0.0
355,297 + ABID97_RS01815 0.21 +0.3
355,298 - ABID97_RS01815 0.22 +0.1
355,298 - ABID97_RS01815 0.22 -0.5
355,348 + ABID97_RS01815 0.32 +0.5
355,349 - ABID97_RS01815 0.32 -0.7
355,360 + ABID97_RS01815 0.34 -0.8
355,360 + ABID97_RS01815 0.34 +1.4
355,511 - ABID97_RS01815 0.64 -0.1
355,774 - ABID97_RS01820 0.16 -0.8
355,774 - ABID97_RS01820 0.16 +0.5
356,235 + -0.4
356,236 - -0.3
356,335 + +0.5
356,335 + -1.5
356,336 - -0.0
356,336 - -0.4
356,414 - -1.8
356,476 - +0.8
356,568 + ABID97_RS01825 0.16 -1.3
356,568 + ABID97_RS01825 0.16 -1.2
356,568 + ABID97_RS01825 0.16 +0.3
356,568 + ABID97_RS01825 0.16 -1.0
356,569 - ABID97_RS01825 0.16 -0.4
356,688 + ABID97_RS01825 0.26 -0.4
356,689 - ABID97_RS01825 0.26 -1.2

Or see this region's nucleotide sequence