Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01095 and ABID97_RS01100 are separated by 92 nucleotides ABID97_RS01100 and ABID97_RS01105 are separated by 166 nucleotides
ABID97_RS01095: ABID97_RS01095 - ABC transporter substrate-binding protein, at 221,034 to 222,365
_RS01095
ABID97_RS01100: ABID97_RS01100 - ABC transporter ATP-binding protein, at 222,458 to 223,270
_RS01100
ABID97_RS01105: ABID97_RS01105 - AMP-binding protein, at 223,437 to 224,684
_RS01105
Position (kb) 222
223
224 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 221.487 kb on + strand, within ABID97_RS01095 at 221.727 kb on + strand, within ABID97_RS01095 at 221.727 kb on + strand, within ABID97_RS01095 at 221.811 kb on + strand, within ABID97_RS01095 at 221.812 kb on - strand, within ABID97_RS01095 at 221.812 kb on - strand, within ABID97_RS01095 at 222.364 kb on - strand at 222.506 kb on + strand at 222.506 kb on + strand at 222.799 kb on + strand, within ABID97_RS01100 at 222.799 kb on + strand, within ABID97_RS01100 at 222.854 kb on + strand, within ABID97_RS01100 at 222.897 kb on - strand, within ABID97_RS01100 at 223.112 kb on + strand, within ABID97_RS01100 at 223.337 kb on + strand at 223.337 kb on + strand at 223.338 kb on - strand at 223.449 kb on + strand at 223.743 kb on + strand, within ABID97_RS01105 at 224.130 kb on + strand, within ABID97_RS01105 at 224.131 kb on - strand, within ABID97_RS01105
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 221,487 + ABID97_RS01095 0.34 -0.7 221,727 + ABID97_RS01095 0.52 +0.2 221,727 + ABID97_RS01095 0.52 -0.5 221,811 + ABID97_RS01095 0.58 -0.5 221,812 - ABID97_RS01095 0.58 -0.3 221,812 - ABID97_RS01095 0.58 +0.3 222,364 - -0.2 222,506 + -0.4 222,506 + +0.6 222,799 + ABID97_RS01100 0.42 -0.1 222,799 + ABID97_RS01100 0.42 -0.9 222,854 + ABID97_RS01100 0.49 -1.9 222,897 - ABID97_RS01100 0.54 +0.1 223,112 + ABID97_RS01100 0.80 -0.5 223,337 + -0.4 223,337 + -0.8 223,338 - -0.5 223,449 + -3.4 223,743 + ABID97_RS01105 0.25 -2.7 224,130 + ABID97_RS01105 0.56 -1.5 224,131 - ABID97_RS01105 0.56 -3.8
Or see this region's nucleotide sequence