Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS16100 and RPSI07_RS16105 are separated by 103 nucleotides RPSI07_RS16105 and RPSI07_RS16110 are separated by 131 nucleotides RPSI07_RS16110 and RPSI07_RS25105 are separated by 93 nucleotides RPSI07_RS25105 and RPSI07_RS16115 overlap by 37 nucleotides
RPSI07_RS16100: RPSI07_RS16100 - AcrB/AcrD/AcrF family protein, at 1,768,352 to 1,771,471
_RS16100
RPSI07_RS16105: RPSI07_RS16105 - tRNA-Leu, at 1,771,575 to 1,771,661
_RS16105
RPSI07_RS16110: RPSI07_RS16110 - hypothetical protein, at 1,771,793 to 1,771,987
_RS16110
RPSI07_RS25105: RPSI07_RS25105 - hypothetical protein, at 1,772,081 to 1,772,410
_RS25105
RPSI07_RS16115: RPSI07_RS16115 - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 1,772,374 to 1,774,380
_RS16115
Position (kb) 1771
1772 Strain fitness (log2 ratio) -1
0
1 at 1771.412 kb on + strand at 1771.413 kb on - strand at 1771.766 kb on + strand at 1771.860 kb on + strand, within RPSI07_RS16110 at 1771.860 kb on + strand, within RPSI07_RS16110 at 1771.964 kb on + strand, within RPSI07_RS16110 at 1771.986 kb on - strand at 1772.199 kb on + strand, within RPSI07_RS25105 at 1772.216 kb on + strand, within RPSI07_RS25105 at 1772.216 kb on + strand, within RPSI07_RS25105 at 1772.217 kb on - strand, within RPSI07_RS25105 at 1772.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,771,412 + +1.1 1,771,413 - -1.0 1,771,766 + +0.2 1,771,860 + RPSI07_RS16110 0.34 -0.4 1,771,860 + RPSI07_RS16110 0.34 +0.1 1,771,964 + RPSI07_RS16110 0.88 -0.6 1,771,986 - -1.0 1,772,199 + RPSI07_RS25105 0.36 -0.4 1,772,216 + RPSI07_RS25105 0.41 -0.7 1,772,216 + RPSI07_RS25105 0.41 +0.0 1,772,217 - RPSI07_RS25105 0.41 +0.1 1,772,453 - +0.4
Or see this region's nucleotide sequence