Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS14085

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS14080 and RPSI07_RS14085 are separated by 366 nucleotidesRPSI07_RS14085 and RPSI07_RS14090 are separated by 12 nucleotides RPSI07_RS14080: RPSI07_RS14080 - GntR family transcriptional regulator, at 1,349,599 to 1,350,351 _RS14080 RPSI07_RS14085: RPSI07_RS14085 - hydroxyisourate hydrolase, at 1,350,718 to 1,351,071 _RS14085 RPSI07_RS14090: RPSI07_RS14090 - membrane protein, at 1,351,084 to 1,352,307 _RS14090 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1349.919 kb on + strand, within RPSI07_RS14080at 1349.919 kb on + strand, within RPSI07_RS14080at 1349.920 kb on - strand, within RPSI07_RS14080at 1350.156 kb on + strand, within RPSI07_RS14080at 1350.173 kb on + strand, within RPSI07_RS14080at 1350.174 kb on - strand, within RPSI07_RS14080at 1350.243 kb on - strand, within RPSI07_RS14080at 1350.243 kb on - strand, within RPSI07_RS14080at 1350.253 kb on + strand, within RPSI07_RS14080at 1350.254 kb on + strand, within RPSI07_RS14080at 1350.254 kb on + strand, within RPSI07_RS14080at 1350.255 kb on - strand, within RPSI07_RS14080at 1350.925 kb on + strand, within RPSI07_RS14085at 1350.926 kb on - strand, within RPSI07_RS14085at 1350.926 kb on - strand, within RPSI07_RS14085at 1350.928 kb on + strand, within RPSI07_RS14085at 1351.015 kb on + strand, within RPSI07_RS14085at 1351.093 kb on + strandat 1351.094 kb on - strandat 1351.094 kb on - strandat 1351.097 kb on + strandat 1351.098 kb on - strandat 1351.171 kb on + strandat 1351.171 kb on + strandat 1351.171 kb on + strandat 1351.172 kb on - strandat 1351.172 kb on - strandat 1351.274 kb on - strand, within RPSI07_RS14090at 1351.334 kb on - strand, within RPSI07_RS14090at 1351.345 kb on + strand, within RPSI07_RS14090at 1351.346 kb on - strand, within RPSI07_RS14090at 1351.346 kb on - strand, within RPSI07_RS14090at 1351.346 kb on - strand, within RPSI07_RS14090at 1351.346 kb on - strand, within RPSI07_RS14090at 1351.387 kb on + strand, within RPSI07_RS14090at 1351.388 kb on - strand, within RPSI07_RS14090at 1351.388 kb on - strand, within RPSI07_RS14090at 1351.388 kb on - strand, within RPSI07_RS14090at 1351.409 kb on - strand, within RPSI07_RS14090at 1351.495 kb on + strand, within RPSI07_RS14090at 1351.496 kb on - strand, within RPSI07_RS14090at 1351.496 kb on - strand, within RPSI07_RS14090at 1351.496 kb on - strand, within RPSI07_RS14090at 1351.558 kb on + strand, within RPSI07_RS14090at 1351.558 kb on + strand, within RPSI07_RS14090at 1351.559 kb on - strand, within RPSI07_RS14090at 1351.771 kb on + strand, within RPSI07_RS14090at 1351.771 kb on + strand, within RPSI07_RS14090at 1351.772 kb on - strand, within RPSI07_RS14090at 1351.772 kb on - strand, within RPSI07_RS14090at 1351.814 kb on - strand, within RPSI07_RS14090at 1351.814 kb on - strand, within RPSI07_RS14090at 1351.814 kb on - strand, within RPSI07_RS14090at 1352.066 kb on + strand, within RPSI07_RS14090at 1352.067 kb on - strand, within RPSI07_RS14090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
remove
1,349,919 + RPSI07_RS14080 0.42 +1.5
1,349,919 + RPSI07_RS14080 0.42 -0.2
1,349,920 - RPSI07_RS14080 0.43 +1.0
1,350,156 + RPSI07_RS14080 0.74 +1.1
1,350,173 + RPSI07_RS14080 0.76 +0.9
1,350,174 - RPSI07_RS14080 0.76 +0.2
1,350,243 - RPSI07_RS14080 0.86 +0.8
1,350,243 - RPSI07_RS14080 0.86 +0.1
1,350,253 + RPSI07_RS14080 0.87 -0.1
1,350,254 + RPSI07_RS14080 0.87 +1.3
1,350,254 + RPSI07_RS14080 0.87 -1.0
1,350,255 - RPSI07_RS14080 0.87 +0.1
1,350,925 + RPSI07_RS14085 0.58 -1.7
1,350,926 - RPSI07_RS14085 0.59 -0.0
1,350,926 - RPSI07_RS14085 0.59 +1.1
1,350,928 + RPSI07_RS14085 0.59 -0.0
1,351,015 + RPSI07_RS14085 0.84 -0.1
1,351,093 + +0.5
1,351,094 - +0.7
1,351,094 - +0.5
1,351,097 + +1.9
1,351,098 - +0.8
1,351,171 + +0.6
1,351,171 + -0.3
1,351,171 + -0.6
1,351,172 - -0.8
1,351,172 - -2.9
1,351,274 - RPSI07_RS14090 0.16 +1.7
1,351,334 - RPSI07_RS14090 0.20 -0.6
1,351,345 + RPSI07_RS14090 0.21 +0.2
1,351,346 - RPSI07_RS14090 0.21 +0.2
1,351,346 - RPSI07_RS14090 0.21 -0.2
1,351,346 - RPSI07_RS14090 0.21 -0.8
1,351,346 - RPSI07_RS14090 0.21 -1.6
1,351,387 + RPSI07_RS14090 0.25 +0.7
1,351,388 - RPSI07_RS14090 0.25 +1.2
1,351,388 - RPSI07_RS14090 0.25 -0.5
1,351,388 - RPSI07_RS14090 0.25 +0.9
1,351,409 - RPSI07_RS14090 0.27 -0.5
1,351,495 + RPSI07_RS14090 0.34 +0.1
1,351,496 - RPSI07_RS14090 0.34 +0.1
1,351,496 - RPSI07_RS14090 0.34 -0.1
1,351,496 - RPSI07_RS14090 0.34 +0.4
1,351,558 + RPSI07_RS14090 0.39 -0.0
1,351,558 + RPSI07_RS14090 0.39 -0.4
1,351,559 - RPSI07_RS14090 0.39 -0.1
1,351,771 + RPSI07_RS14090 0.56 +0.5
1,351,771 + RPSI07_RS14090 0.56 +0.7
1,351,772 - RPSI07_RS14090 0.56 -0.5
1,351,772 - RPSI07_RS14090 0.56 -0.1
1,351,814 - RPSI07_RS14090 0.60 +2.9
1,351,814 - RPSI07_RS14090 0.60 -0.3
1,351,814 - RPSI07_RS14090 0.60 +0.7
1,352,066 + RPSI07_RS14090 0.80 +0.4
1,352,067 - RPSI07_RS14090 0.80 +0.4

Or see this region's nucleotide sequence